PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG554100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 316aa    MW: 33541.3 Da    PI: 6.9049
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG554100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.24.2e-184898155
                  AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         s++ GVr+++ +grWvAeI+d +   ++ r +lg+f tae Aaka+++a++ l+g
  Pavir.2NG554100.1.p 48 SKFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEAAAKAYDEAARLLRG 98
                         79********.7*********32...35***********************9998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008473.4E-124898IPR001471AP2/ERF domain
CDDcd000186.45E-1748106No hitNo description
SuperFamilySSF541715.04E-1948107IPR016177DNA-binding domain
PROSITE profilePS5103219.92849106IPR001471AP2/ERF domain
SMARTSM003804.7E-3449112IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.109.4E-2849106IPR001471AP2/ERF domain
PRINTSPR003676.2E-75061IPR001471AP2/ERF domain
PRINTSPR003676.2E-77288IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MELNFQTQPS VFQLEDYSSY YYYYQQEAAA QAKPSKPRGR KKGSNNHSKF VGVRQRPSGR  60
WVAEIKDTTQ KIRMWLGTFE TAEAAAKAYD EAARLLRGNE ARTNFAPRIS PDCPLAVRIR  120
GLLQHKKIKK AKAAAARSSS AAAAAASKQK AASSPSPTTS NSNSNCHSTN SACGGPSSSS  180
SSSSSSAVSC DDAMAMLNGG GGGGGGALDG GEVYRPEFGP VGAEEFDSWM LDSAFGQFPV  240
LDGFAAVESA VPAAPAEEEL AAAAAPGEMA EFERIKVERR ISASLYAMNG LQEYFDRVFD  300
ASACDPFWDI SPLCH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A4e-13471051271Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG554100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0404151e-164BT040415.1 Zea mays full-length cDNA clone ZM_BFc0090C04 mRNA, complete cds.
GenBankJX4699531e-164JX469953.1 Zea mays subsp. mays clone UT3215 AP2-EREBP-type transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004958111.11e-135ethylene-responsive transcription factor RAP2-11
TrEMBLK3ZVQ51e-140K3ZVQ5_SETIT; Uncharacterized protein
STRINGPavir.Ba00533.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.18e-25related to AP2 11