PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG262600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 1057aa    MW: 113890 Da    PI: 6.8857
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG262600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157e-05909927119
                          EEETTTTEEESSHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                          y+C++Cg++Fs  ++L++H
  Pavir.2NG262600.1.p 909 YQCKICGERFSLEEELRSH 927
                          9****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5139135.34463191IPR006569CID domain
Gene3DG3DSA:1.25.40.902.0E-4265192IPR008942ENTH/VHS
SMARTSM005821.4E-4266188IPR006569CID domain
SuperFamilySSF484648.72E-3866184IPR008942ENTH/VHS
CDDcd035621.55E-4170177No hitNo description
PfamPF048181.4E-9119172IPR006903RNA polymerase II-binding domain
Gene3DG3DSA:3.30.160.603.3E-4905928IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.473909937IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1057 aa     Download sequence    Send to blast
MRASASAAPM EASASASARR SAPGPDPGAK KPRLAQPPPR DPRSSSYAAA SNGAAASAAE  60
QTLVDELLGQ YRTALGELTF NSKPIITNLT IIAGENLQAA KPIAALICAN ILEVPSEQKL  120
PSLYLLDSIV KNIGKDYVKH FSARLPEVFC KAYRQVDPSI HHSMRHLFGT WKGVFPPLPL  180
QTIEKELGFQ SSANGSSSAA PLRPDSQSPR PSNSIHVNPK YLERQQLNQS TKGILGSGAK  240
AAVIADAGDD VERPNRLGTD RSAGRRLDAP ITRPNIQRTQ RDPFSNPVNE KQAGRDVRGL  300
GFSSNSQQAV VGPGQVRSKP KGQDGIGGPY YATGVGSSEE QFDRRSNFYS SKDVQPSGSV  360
RLDSALLPTP SINSDRVGRP SSNKSWKHFE EEEYVWDDVH SQAADYGGNN TIRKGEWMAD  420
DGNAKFASLQ RAKWPEVGAV EHLDPNIHKL DSLPRFGLST GQDRRLAAYL DHEEYIHGKH  480
EVEPRIDREI RTDGQPFPPP RSSSLWVSQE KEHPDIGLDP RISRFSNQPG ERSMSVSITS  540
SVPVGLSGPY AGRSSLDIAN SVPTRSTETF GQQKHRYWSS SPPPAHSPSS IAPFARQSSP  600
NAAEPDFYPS RSFSQLGQNP QEEYSQRAAA FAKDSHFIAQ NARLTQGQPS LQAIQQAQKY  660
PTLQSKPHIK PTDQVQASFS RENSPSLLRP SIQLGEVSLP TDSTPISSDL TSASNLLAGL  720
IKSGFKPNNP GDLASLRAQP LVPSGPLPHT LPSPTVAASS LQNAAGENTI LQTQATNTAR  780
PPLPPGLPPP PSTQSAEKAA PLSSLLSSLV AKGLISTPAT DSSTAVPSQP NKSSVNATNV  840
TAAAMPLPAQ MPSVGKEASN SASSAPANIL LPKAVEIKAG DLIGLEFKPE KLRKYNEHVI  900
SSLFGDRNYQ CKICGERFSL EEELRSHTTC RGSRESETIY AGIAPKKWYP SKNSYIDGSN  960
EMEDSAEASD VDLSPGEVCE FMVPADESQI ICALCGEPFD DFYSIEKGDW MYKDTVFLDF  1020
PNGESSCGSN VEGKEQMPIV HVRCMPRGPN DGMEVD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sz9_A2e-14671718112PCF11 protein
1sz9_B2e-14671718112PCF11 protein
1sz9_C2e-14671718112PCF11 protein
1sza_A2e-14671718112PCF11 protein
1sza_B2e-14671718112PCF11 protein
1sza_C2e-14671718112PCF11 protein
2bf0_X2e-146717113117PCF11
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.159150.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG262600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801398.10.0uncharacterized protein LOC112880881
TrEMBLA0A2T7EP410.0A0A2T7EP41_9POAL; Uncharacterized protein
STRINGPavir.Ba02617.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP726178