PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG253000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 310aa    MW: 35054.1 Da    PI: 9.6613
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG253000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.61.2e-06146165120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          + Cp C k+Fsr  nL+ H+
  Pavir.2NG253000.1.p 146 FACPVCRKTFSRYNNLQMHM 165
                          78*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576678.16E-6141168No hitNo description
PROSITE profilePS5015710.616146173IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.606.2E-7146165IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280148168IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349250286IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 310 aa     Download sequence    Send to blast
MANPYTFPRP HIEHLWFQRS LVSPPPPAFT KEALPLLSLL PPSHDYNHYH NNDRLRKKEK  60
WVMEDVDIKL RIGPPSPNRD LPLNLAKSAT VAGAGHNKVE EFEELGSEGG TAGDGRCLEH  120
FAIGKLTKGN YWIPTPAQIL FGPTLFACPV CRKTFSRYNN LQMHMWGHGS QYRRGPDSLR  180
GAQPAAMLRL PCFCCAPGCR NHVDHPRAWP LKDFRTLQTH YRRRHCARPF LCRRCGKALA  240
VRGDWRTHEK NCGRRWRCTC GSDFKHKRSL KDHVRAFGRD HVEEHPPAAA SIACNHGVAG  300
EDPGPGDQM*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional regulator. {ECO:0000305|PubMed:20541552}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG253000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574671e-159AK357467.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1054C05.
GenBankAK3594101e-159AK359410.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801470.10.0zinc finger protein WIP2-like
SwissprotQ8W0304e-96ZWIP4_ARATH; Zinc finger protein WIP4
TrEMBLA0A2S3GY050.0A0A2S3GY05_9POAL; Uncharacterized protein
TrEMBLA0A2T7EQK20.0A0A2T7EQK2_9POAL; Uncharacterized protein
STRINGPavir.Ba02648.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.17e-98C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]