PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG240000.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 556aa    MW: 61443.8 Da    PI: 8.0296
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG240000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2120.000656687223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         kC++C++ F ++ n++rH r+H
  Pavir.2NG240000.1.p 66 KCTKCSREFCSSINFRRHTRVH 87
                         7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7026587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 556 aa     Download sequence    Send to blast
MSASRKSSHV TTKDSAETAR DIIPTSSQIQ SMKVPDAVAA IAQAAAKANG ETEKCMSCRK  60
QVQLDKCTKC SREFCSSINF RRHTRVHRRT LKLDKDFPKN RDHLAAFWNK LTVDEASTVL  120
SSNNVVVEGV TGSSILTTLS AWMCKPGYAS LPMAYARAGS ELLDLIQTKV SMQLPVSSND  180
LFSVLGEASE KTFLCTNTAA CIQKFLFDGE ANKIATELKN VVACASYMLE QKLVEAWCAD  240
KAAEALRCQK LLVEEEEAAQ KRQAELMERK RMKKLRQKEQ RLKDLKDENV VIQLPEIMDD  300
TSCSPGIQSF KAISDPDLYE QEKSQYIQFP GPVTSETGNG FNVDLSVEYV SCDSVPEMDK  360
GVVLRKQVIS RHHLGITEKL AETNFVSGSA VASKQAALAR PSNYRDANVC SLPNRNKTWA  420
RKVPAEIGNQ CPKHGLDVDD EHNMAPSKNS RVLIGSISVA IEDGNEHLKD SRSKNERVPP  480
SSKIMKHASV NVNCSCFSSM TDESSHSTCC SADFAEGEHL RRTMFSSKEA TSFRSQRWKE  540
AIAADHVKLV LCHDK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267274ERKRMKKL
2272282KKLRQKEQRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.71287e-92callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG240000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799780.10.0uncharacterized protein LOC112879646 isoform X2
TrEMBLA0A2T8KP270.0A0A2T8KP27_9POAL; Uncharacterized protein
STRINGPavir.Ba02682.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85032430
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.12e-85C2H2-like zinc finger protein