PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG238700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 581aa    MW: 63936.4 Da    PI: 7.0084
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG238700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000686687223
                         EETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                         kC++C++ F ++ n++rH r+H
  Pavir.2NG238700.2.p 66 KCTKCSREFCSSINFRRHTRVH 87
                         7*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.7026587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 581 aa     Download sequence    Send to blast
MSASWKSSHV TTKDGAETAR DIISTSSQIQ SMKVPDAVAA IAQAAAKAND LPGWPLFSPP  60
KVQLDKCTKC SREFCSSINF RRHTRVHRRT LKVDKDFPKN RDHLAAFWNK LTVDEASTVL  120
SLSNVVVEGV SGSSILTTLS SWMCKPGYAS LPMAYARAGS ELLDLIQTKI SMQLPVSSNE  180
LFSVLDEASE KTFLCTNTAA CIQKFLFDGE ANKIATELKN VVACASYMLE QKLVEAWCAD  240
KAAEALRCQK LLVEEEEAAQ KRQAELMERK RMKKLRQKEQ RLKDLKDENV VIQLPEIMDD  300
TTCSPGIQSF KAISDPDLNE QEKSQYIQFP APVTSETGNG FNVDLSVEDV SCDSAPEMDK  360
GVVLRKQVIS RHHLGRTEKL AENSFVSGSA VVSKQAALAR PSNYRDANVC SSPNRNKTWA  420
RKVPAEIGNQ CPKHGLDVDD EHNMALSKNS RVLIGSICVA IEDGNEHLKD SRSKNDPVPP  480
CSKIVKHASV VLQPVTHKEN RNEGISNSDG NSAPADENPS CFSSMTDESS HSTCCSADFA  540
EGEHLRRTMF SSKEATSFLS QRWKEAIAAD HVKLVLCHDK *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267274ERKRMKKL
2272282KKLRQKEQRLK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.71280.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG238700.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025799782.10.0uncharacterized protein LOC112879646 isoform X4
TrEMBLA0A2T7EP990.0A0A2T7EP99_9POAL; Uncharacterized protein
STRINGPavir.Bb01437.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.16e-87C2H2-like zinc finger protein