PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2NG123900.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 438aa    MW: 46494.9 Da    PI: 6.3316
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2NG123900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.62.3e-051535323
                         ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 CpdCgksFsrksnLkrHirtH 23
                         C+ CgksFs+  +L  H+r+H
  Pavir.2NG123900.1.p 15 CKVCGKSFSSGRSLGGHMRSH 35
                         ********************9 PP

2zf-C2H220.71.1e-06105125323
                          ETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   3 CpdCgksFsrksnLkrHirtH 23 
                          C  Cgk F ++ +L rH+r+H
  Pavir.2NG123900.1.p 105 CRECGKLFASWRSLFRHMRSH 125
                          ********************9 PP

3zf-C2H216.23e-05290312123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          y+Cp Cgk+Fs+   L  H  +H
  Pavir.2NG123900.1.p 290 YECPGCGKVFSSYQALGGHRASH 312
                          99***********9999998887 PP

4zf-C2H214.10.00014376398123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          + Cp C ++Fs+  +L  H r+H
  Pavir.2NG123900.1.p 376 FACPVCFRVFSSGQELSGHKRLH 398
                          78*******************99 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.8031340IPR007087Zinc finger, C2H2
PfamPF139122.2E-91336IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.5E-51335IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.44E-101335No hitNo description
SMARTSM003550.0181335IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002801535IPR007087Zinc finger, C2H2
SuperFamilySSF576672.44E-1098125No hitNo description
PROSITE profilePS5015710.845103130IPR007087Zinc finger, C2H2
SMARTSM003550.0039103125IPR015880Zinc finger, C2H2-like
PfamPF138947.7E-4104125No hitNo description
Gene3DG3DSA:3.30.160.601.2E-4105126IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280105125IPR007087Zinc finger, C2H2
SuperFamilySSF576675.56E-5288314No hitNo description
PfamPF139121.1E-11289314IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.609.3E-4289313IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.616290317IPR007087Zinc finger, C2H2
SMARTSM003550.031290312IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280292312IPR007087Zinc finger, C2H2
PfamPF139122.1E-6376398IPR007087Zinc finger, C2H2
PROSITE profilePS5015710.159376398IPR007087Zinc finger, C2H2
SMARTSM003550.1376398IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280378398IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 438 aa     Download sequence    Send to blast
MDAVEMELAA VRHGCKVCGK SFSSGRSLGG HMRSHLSLGE AAAEGDAAEE LARAAANGGR  60
IPNGVVGYGL RENPRKTRRL SDFADEEKEE DGGGDGDGDD EHKACRECGK LFASWRSLFR  120
HMRSHASGGR DRDEEEDVDM EEEFVPEAAE VEEAEVVVRA VEAPLLEPAA VTALAAAPRR  180
RRRSMRVAAP PPARPPVPCG FDKEPEDVAL CLLMLSRNTG VWSSPVKEER SDSAKKRAGL  240
PRSGGAHNSD DASALLQHGD AKIKGRVPMG RKRSSPKLQR EAMAPKRTRY ECPGCGKVFS  300
SYQALGGHRA SHKRINTSCS APKVAPAAAA SLAPEPSTET YASFSTLSQS ASPDSVATGF  360
GKLDAQAAAE AAAEKFACPV CFRVFSSGQE LSGHKRLHLM PAAGGELYAG EAEQDQEQHS  420
AAGFLDLNFP PAPPEEA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2NG123900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025800381.10.0zinc finger protein ZAT4-like
TrEMBLA0A3L6TCN70.0A0A3L6TCN7_PANMI; Uncharacterized protein
STRINGPavir.Ba02060.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38613573
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35280.18e-16C2H2-like zinc finger protein