PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG360800.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 385aa    MW: 42253.1 Da    PI: 6.2521
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG360800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2232e-07150172123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          ++C+ Cgk F+r  nL+ H+r H
  Pavir.2KG360800.1.p 150 HSCKVCGKGFKRDANLRMHMRGH 172
                          79*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.2E-5148175No hitNo description
SMARTSM003550.0017150172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015712.321150177IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.602.0E-6150176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280152172IPR007087Zinc finger, C2H2
SMARTSM0035543198231IPR015880Zinc finger, C2H2-like
SMARTSM0035527236258IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 385 aa     Download sequence    Send to blast
MEVRNNNVES SMEAHRELHD HRHSQAGGSG SDDPRTTVLT YLTFLEQKIA HLRGIICSAP  60
RPPQQIVSAE LSCIAVQLVS ISNTLAAASG AAAEEDAKSP PRAATPSEGD SDSSDHDLHA  120
EDDDELRLPP AGSYEVIELD KEEILAPHVH SCKVCGKGFK RDANLRMHMR GHGEEYKTAA  180
ALAKPAGMDA PPPARCFYSC PFVGCKRNRE HKSFQPLKTA VCVKNHYRRS HCDKSYTCRR  240
CNVKRFSVLA DLRTHEKHCG RDRWVCSCGT SFSRKDKLFG HVAAFDGHAP ALPPEEADHS  300
AANGHGSASD QMLMETEAAR RMANNQERFS DSIFDDLSCS DIKGFPLTDT QCLDDERGSL  360
FPMDLYSCDF DGFDLFGAPG IADF*
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may be involved in aluminum tolerance. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG360800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1044871e-107AC104487.3 Oryza sativa chromosome 3 BAC OSJNBa0042I09 genomic sequence, complete sequence.
GenBankAK2876051e-107AK287605.1 Oryza sativa Japonica Group cDNA, clone: J065055P16, full insert sequence.
GenBankAP0149591e-107AP014959.1 Oryza sativa Japonica Group DNA, chromosome 3, cultivar: Nipponbare, complete sequence.
GenBankCP0126111e-107CP012611.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 3 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025794847.10.0zinc finger protein STOP1 homolog
SwissprotQ943I61e-101STOP1_ORYSJ; Zinc finger protein STOP1 homolog
TrEMBLA0A3L6SDL00.0A0A3L6SDL0_PANMI; Protein SENSITIVE TO PROTON RHIZOTOXICITY 1-like
STRINGPavir.J01834.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP151238111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34370.39e-96C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]