PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG272100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 311aa    MW: 35099.2 Da    PI: 9.9546
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG272100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.00016147166120
                          EEETTTTEEESSHHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                          ++Cp C k+Fsr  nL+ H+
  Pavir.2KG272100.1.p 147 FTCPVCCKTFSRYNNLQMHM 166
                          89*****************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.23E-5139169No hitNo description
Gene3DG3DSA:3.30.160.601.2E-6147166IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.325147174IPR007087Zinc finger, C2H2
PROSITE patternPS000280149169IPR007087Zinc finger, C2H2
PROSITE profilePS501579.349251287IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 311 aa     Download sequence    Send to blast
MANPYTFLRP HIEHLWFQRS LVSPPPPAFT KEALPLLSLL PRSHDYNHFH KNDGLRKKEK  60
RVTEDVDIKL RIGPPSPNRD LPLNLAKISA TVASAGDNKV EEYEDLGSEG GAAGDGRCLE  120
YFAIGKLTKG KYWIPTPAQI LFGPTLFTCP VCCKTFSRYN NLQMHMWGHG SQYRRGPDSL  180
RGAQPAAMLR LPCFCCAPGC RSHVDHPRAR PLKDFRTLQT HYRRRHCARP FLCRRCGKAL  240
AVRGDWRTHE KNCGRRWRCA CGSDFKHKRS LRDHVRAFGR DHVEEHPPAS SIGCNRGVAG  300
EDRPGAGDQM *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in developing carpels (PubMed:17600712). Expressed in the shoot apical meristem and the replum (PubMed:25039392). {ECO:0000269|PubMed:17600712}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG272100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3574671e-167AK357467.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, partial cds, clone: NIASHv1054C05.
GenBankAK3594101e-167AK359410.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv1096E11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801470.10.0zinc finger protein WIP2-like
SwissprotQ9SVY12e-96ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2S3GY050.0A0A2S3GY05_9POAL; Uncharacterized protein
TrEMBLA0A2T7EQK20.0A0A2T7EQK2_9POAL; Uncharacterized protein
STRINGPavir.Ba02648.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP58638170
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.19e-99C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]