PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG267500.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family LBD
Protein Properties Length: 226aa    MW: 25200.4 Da    PI: 6.7618
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG267500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF2601216.6e-3871071100
               DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 
                          +C aCk+lrrkC+k+Cv+apyf+++q +++fa++hk+FGasn +kll +lpe+ r +a+ +++yeA+ r+rdPvyG+v++i++lqq++ +
  Pavir.2KG267500.1.p   7 PCGACKFLRRKCVKGCVFAPYFCHDQgAAHFAAIHKVFGASNASKLLMHLPENARCEAAVTITYEAQERLRDPVYGCVAHIFALQQKVVT 96 
                          7*************************89************************************************************** PP

               DUF260  90 lkaelallkee 100
                          l+a+la+lk +
  Pavir.2KG267500.1.p  97 LQAQLASLKVQ 107
                          *****998765 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089121.4886108IPR004883Lateral organ boundaries, LOB
PfamPF031951.0E-357104IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MTGFGSPCGA CKFLRRKCVK GCVFAPYFCH DQGAAHFAAI HKVFGASNAS KLLMHLPENA  60
RCEAAVTITY EAQERLRDPV YGCVAHIFAL QQKVVTLQAQ LASLKVQASQ GYTNEFFMSG  120
TQQDNIYVNK FMDYQQEEGG MPHPVESCTS VKNESQQYLG SNIMTCTSMQ SHQLHNPHQY  180
RSDSTSSFNT DNDPSCTMFY LNLQEDVQKN GYYCMDNLQS MAPAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ly0_A2e-3231017104LOB family transfactor Ramosa2.1
5ly0_B2e-3231017104LOB family transfactor Ramosa2.1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG267500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020163832.12e-86LOB domain-containing protein 17-like
TrEMBLA0A3L6T7F71e-154A0A3L6T7F7_PANMI; Uncharacterized protein
STRINGPavir.J03376.1.p1e-170(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25013893
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58190.13e-60lateral organ boundaries-domain 29