PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG218200.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 901aa    MW: 97268.6 Da    PI: 6.3263
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG218200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.9e-05753771119
                          EEETTTTEEESSHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                          y+C++Cg++Fs  ++L++H
  Pavir.2KG218200.2.p 753 YQCKICGERFSLEEELRSH 771
                          9****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.8E-4749772IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.432753783IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 901 aa     Download sequence    Send to blast
MRHLFGTWKG VFPPPPLQTI EKELGFQSSA NGSSSAAPSR PDSQSPRPSN SIHVNPKYLE  60
ARQQLNQPTK GILGSGAKAA VIADAGDDVE RPNRLGTDRS AGRRLDAPNA RPNIQRTQRD  120
PFSNPVNEKQ AGRDVRGLGL SSISQQAVVG TGQVRSKPKG QDGIGGLYYG TDVGSSEEQF  180
DRRSNFYSSK DVRPSGPVRL DSALLPTPSI NSDRIGRPSS NRSWKHSEEE EYVWDDVHSQ  240
AADYGGNNTV RKGEWMADDG NAKFASLQRA KWPEVGAVEH LDPNIHKLDS LPRFGLATGQ  300
DRRHAAYLDH EEYIHGRHEV EPRIDREIRP DGQQLPPHRS SSLWVSQEKV HPDIGLDPRI  360
SRFSNQPGER STIYTGTMSA SITSSVSVGL SGAYAGRSSL DSANSVPTRS TETFGQQKHR  420
YWSSSPPPVH SPSSTAPFAH QSSPNPAEPD FYPSRPFSQL GQNPQEEYSQ RVAAFAKDSH  480
FIAQNAGLTQ GQPSLQATQQ AQKYPTLQSK PHIKPTDQVQ ASFSRENSPS LCRPSIQLGE  540
VSLPTDSTPI RSDLTGASNL LAGLIKSGFK PNNPGDLASL RAQPLVPSGP LPHTLPSAPM  600
ASSSLQNAAG ENTTLQTQIT NTARPPLPPG LPPPPSTQSA EKAAPLSSLL SSLVAKGLIS  660
TPATDSSTAV PSQPNESSVN ATNVTAAAMP LPAQMPSVGK EASNSVSSAP TNVLLLKAVE  720
IKTGDLIGLE FKPEKLRKYN EHVISSLFGD RNYQCKICGE RFSLEEELRS HTTCGGSRAS  780
ETSFAGIAPK KWYPSKNSYI DGSNEMEDSA EASDVDLSSG EVCEFMVPAD ENQIICALCG  840
EPFDDFYSIE KGDWMYKDTV FLEFPNGESN CGSNVEGKEQ VPIVHVRCMP KDSNDGMEVD  900
*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.159150.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG218200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801398.10.0uncharacterized protein LOC112880881
TrEMBLA0A2T7EP410.0A0A2T7EP41_9POAL; Uncharacterized protein
STRINGPavir.Bb01710.1.p0.0(Panicum virgatum)