PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG218200.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 1062aa    MW: 114269 Da    PI: 6.7233
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG218200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2157.1e-05914932119
                          EEETTTTEEESSHHHHHHH CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrH 19 
                          y+C++Cg++Fs  ++L++H
  Pavir.2KG218200.1.p 914 YQCKICGERFSLEEELRSH 932
                          9****************** PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5139136.27161189IPR006569CID domain
Gene3DG3DSA:1.25.40.901.0E-4263193IPR008942ENTH/VHS
SuperFamilySSF484643.6E-3864183IPR008942ENTH/VHS
SMARTSM005823.2E-4364186IPR006569CID domain
CDDcd035626.44E-4268177No hitNo description
PfamPF048189.6E-10117170IPR006903RNA polymerase II-binding domain
Gene3DG3DSA:3.30.160.603.4E-4910933IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS501579.432914944IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1062 aa     Download sequence    Send to blast
MRASASAAPM EASASARRSA PGPDPGAKKP RLAQPPPRDP RSSSYAAASN GAAASAAEQA  60
LVDELLGQYR TALGELTFNS KPIITNLTII AGENLQAAKP IAALICANIL EVPSEQKLPS  120
LYLLDSIVKN IGKDYVKHFS ARLPEVFCKA YKQVDPSIHH SMRHLFGTWK GVFPPPPLQT  180
IEKELGFQSS ANGSSSAAPS RPDSQSPRPS NSIHVNPKYL EARQQLNQPT KGILGSGAKA  240
AVIADAGDDV ERPNRLGTDR SAGRRLDAPN ARPNIQRTQR DPFSNPVNEK QAGRDVRGLG  300
LSSISQQAVV GTGQVRSKPK GQDGIGGLYY GTDVGSSEEQ FDRRSNFYSS KDVRPSGPVR  360
LDSALLPTPS INSDRIGRPS SNRSWKHSEE EEYVWDDVHS QAADYGGNNT VRKGEWMADD  420
GNAKFASLQR AKWPEVGAVE HLDPNIHKLD SLPRFGLATG QDRRHAAYLD HEEYIHGRHE  480
VEPRIDREIR PDGQQLPPHR SSSLWVSQEK VHPDIGLDPR ISRFSNQPGE RSTIYTGTMS  540
ASITSSVSVG LSGAYAGRSS LDSANSVPTR STETFGQQKH RYWSSSPPPV HSPSSTAPFA  600
HQSSPNPAEP DFYPSRPFSQ LGQNPQEEYS QRVAAFAKDS HFIAQNAGLT QGQPSLQATQ  660
QAQKYPTLQS KPHIKPTDQV QASFSRENSP SLCRPSIQLG EVSLPTDSTP IRSDLTGASN  720
LLAGLIKSGF KPNNPGDLAS LRAQPLVPSG PLPHTLPSAP MASSSLQNAA GENTTLQTQI  780
TNTARPPLPP GLPPPPSTQS AEKAAPLSSL LSSLVAKGLI STPATDSSTA VPSQPNESSV  840
NATNVTAAAM PLPAQMPSVG KEASNSVSSA PTNVLLLKAV EIKTGDLIGL EFKPEKLRKY  900
NEHVISSLFG DRNYQCKICG ERFSLEEELR SHTTCGGSRA SETSFAGIAP KKWYPSKNSY  960
IDGSNEMEDS AEASDVDLSS GEVCEFMVPA DENQIICALC GEPFDDFYSI EKGDWMYKDT  1020
VFLEFPNGES NCGSNVEGKE QVPIVHVRCM PKDSNDGMEV D*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1sz9_A2e-14651698112PCF11 protein
1sz9_B2e-14651698112PCF11 protein
1sz9_C2e-14651698112PCF11 protein
1sza_A2e-14651698112PCF11 protein
1sza_B2e-14651698112PCF11 protein
1sza_C2e-14651698112PCF11 protein
2bf0_X2e-146516913117PCF11
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.159150.0callus| leaf| root| stem
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.2KG218200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025801398.10.0uncharacterized protein LOC112880881
TrEMBLA0A2T7EP410.0A0A2T7EP41_9POAL; Uncharacterized protein
STRINGPavir.Bb01710.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP726178