PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.2KG115600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family ERF
Protein Properties Length: 304aa    MW: 32741.8 Da    PI: 7.9303
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.2KG115600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.6e-184291255
                  AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                         ++ GVr+++ +grWvAeI+d +   ++ r +lg+f taeeAa+a+++a+  l+g
  Pavir.2KG115600.1.p 42 KFVGVRQRP-SGRWVAEIKDTT---QKIRMWLGTFETAEEAAQAYDEAACLLRG 91
                         799******.7*********32...35**********************99998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.8E-274299IPR001471AP2/ERF domain
SMARTSM003802.9E-3542105IPR001471AP2/ERF domain
SuperFamilySSF541711.18E-184299IPR016177DNA-binding domain
CDDcd000183.30E-304299No hitNo description
PfamPF008471.8E-124291IPR001471AP2/ERF domain
PROSITE profilePS5103219.5994299IPR001471AP2/ERF domain
PRINTSPR003672.3E-74354IPR001471AP2/ERF domain
PRINTSPR003672.3E-76581IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000302Biological Processresponse to reactive oxygen species
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0035865Biological Processcellular response to potassium ion
GO:0048528Biological Processpost-embryonic root development
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 304 aa     Download sequence    Send to blast
MELQFQQPQS HPQQQCSYQL PVRKETKSSP KVRSKCGGGG GKFVGVRQRP SGRWVAEIKD  60
TTQKIRMWLG TFETAEEAAQ AYDEAACLLR GANTRTNFAT GAHASSPDSP LAARIRGILN  120
HKKLKKNAAP PTVNFFPAVY HRAGAIGTAV ATSSTSTSTI TTTTSSSSPS SSINFSMSSN  180
GVRTPILPAQ SIAEEVCRPY LISGSEELQQ LASQQYEQCW ALNTSLPSTD GCAMANNNAC  240
SAVADAELGK IKLEKELFDT DRVPNGGMDR VQDKELFDTG NDPSDSLWDL PPICPLSCRS  300
LMY*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00521DAPTransfer from AT5G19790Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012699021.11e-145PREDICTED: ethylene-responsive transcription factor RAP2-11-like
TrEMBLK4A2Y51e-131K4A2Y5_SETIT; Uncharacterized protein
STRINGSi033237m1e-130(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39003273
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G19790.13e-18related to AP2 11