PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG274600.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 490aa    MW: 53743 Da    PI: 7.7976
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG274600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.35.8e-056688123
                         EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                         y C+ C+k F r  nL+ H r H
  Pavir.1NG274600.1.p 66 YICEVCHKGFQRDQNLQLHRRGH 88
                         89*******************88 PP

2zf-C2H210.90.0014142164123
                          EEETTTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                          +kC  C+k +  +s+ k H + +
  Pavir.1NG274600.1.p 142 WKCDRCSKKYAVQSDWKAHTKIC 164
                          58*****************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.5E-56588IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.83E-66588No hitNo description
PROSITE profilePS5015710.7416688IPR007087Zinc finger, C2H2
SMARTSM003550.0386688IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002806888IPR007087Zinc finger, C2H2
SMARTSM0035547107137IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-4130163IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576672.83E-6137162No hitNo description
SMARTSM00355230142162IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 490 aa     Download sequence    Send to blast
MSNTSEEESL NNFQQQAKLE ACAAGSSKGD TVMPVVKKRR GHPGNLDPDV EVVALSPKTL  60
LATNRYICEV CHKGFQRDQN LQLHRRGHNL PWKLKQRSST EAKKKVYVCP ELTCPHHDAS  120
RALGDLTGIK KHYSRKHGEK KWKCDRCSKK YAVQSDWKAH TKICGTKEYR CDCGTIFSRK  180
DSFITHRAFC DALAEDNSRV NHSLATMVGS LHGHQQDIFS HGVPTFSASP TDVIANLSSN  240
DHNSDSHLRS LSPYALITRN TALFSNQISP KDSGFPLDGS ASSYPYMPMN SPYMSATALL  300
QKAAEMGAKT SQDPISPLLL KSFPSNVTTP RDHMDISSGS QGDSLGNSAA NSVGIKTAED  360
EGSYMNGRNN ILMNSPWVSS YRPTTVPLIG LMNHSFSMRA EKESPGIFPG SQTQHSRQEH  420
ISGVGDAGLT QDFLGLGGSG NLEMSSEIYN ADVTALSYSD EQQKPQEHIY SYHQSSLDSA  480
ALEKPIWES*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-33138201366Zinc finger protein JACKDAW
5b3h_F5e-33138201366Zinc finger protein JACKDAW
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG274600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849460.0KF184946.1 Saccharum hybrid cultivar R570 clone BAC 166F02 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025818794.10.0protein indeterminate-domain 2-like
TrEMBLA0A2T7F7010.0A0A2T7F701_9POAL; Uncharacterized protein
STRINGPavir.Aa01904.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP114253240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.11e-105indeterminate(ID)-domain 2