PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1NG129100.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BES1
Protein Properties Length: 384aa    MW: 38771 Da    PI: 10.1764
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1NG129100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822147.88.7e-4645140497
               DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl..eeaeaagssasaspe 91 
                           r p+  ErEnn+rRERrRR ++++i++GLRa+Gny lp ++DnneVl+ALc eAGwvve+DGttyr+g++p+  + +   g sa +sp 
  Pavir.1NG129100.1.p  45 LRVPSSTERENNRRRERRRRLVTSRIFSGLRAHGNYILPRQCDNNEVLRALCDEAGWVVEPDGTTYRRGCRPPppHMHGGFGGSAPVSPG 134
                          6899********************************************************************974455567889999999 PP

               DUF822  92 sslqss 97 
                          ss+  +
  Pavir.1NG129100.1.p 135 SSYPVT 140
                          999844 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056876.4E-4346139IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 384 aa     Download sequence    Send to blast
MHGGGMVGAG AGAGAGGSRG GGGDKGKGGG RSGNGSGARG AMAPLRVPSS TERENNRRRE  60
RRRRLVTSRI FSGLRAHGNY ILPRQCDNNE VLRALCDEAG WVVEPDGTTY RRGCRPPPPH  120
MHGGFGGSAP VSPGSSYPVT PTAPYGLGSG SSHLTLGRGG GLFYGAAARG AAGSNGLADW  180
FRRLPGAPDT GASSSSAPVT PQNGSPPQTM FERWAAENNN AAAGAFSLQP RGAAGLSRYG  240
AFPQQPITMP PSPVGGGAPV DPVRLLAGIQ ISTAAAAAAN NNRVRAYSPL GTPPALPSLF  300
GPGAPSFMLR APGPVLQGSG GPWAAPAPAP SPTARAGGGG DVEMTPREFS FAWEGESVTE  360
DYADDEDALE LTLGNSKTRA DRA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A2e-2066123392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B2e-2066123392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C2e-2066123392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D2e-2066123392449Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1NG129100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819084.11e-137protein BZR1 homolog 4-like
TrEMBLA0A3L6QEY51e-145A0A3L6QEY5_PANMI; Uncharacterized protein
STRINGPavir.Aa02766.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1866659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18890.14e-22BES1/BZR1 homolog 3