PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG497700.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family NAC
Protein Properties Length: 408aa    MW: 45888.4 Da    PI: 5.1369
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG497700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM98.59.7e-31581971128
                  NAM   1 lppGfrFhPtdeelvveyLkk..kvegkkleleev.ikevd....iykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk.... 79 
                          lp+G++F+P+d+el+++ L+k  kv  k++++ +  i+++d    ++ ++P++Lp  vk++ +  +fF+++ k+y+tg++k+r+++    
  Pavir.1KG497700.1.p  58 LPKGVKFDPSDQELLWHLLAKigKVGVKPHPFIDEfIPTIDsnegLCCTHPQKLP-GVKQDGSVSHFFHRTFKAYTTGTKKRRKINtdel 146
                          799************8888763345666655533236655544559*********.677888899******************7544566 PP

                  NAM  80 .sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           + +W++tgk+k+v+  +g++ g+kk++v y  + +  k ekt+Wvmh+y++
  Pavir.1KG497700.1.p 147 gEVRWNKTGKTKAVVI-GGTHLGCKKIMVMYasNVKGGKQEKTNWVMHQYHV 197
                          6899************.999***********6544667778*********97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019419.42E-3543216IPR003441NAC domain
PROSITE profilePS5100529.30158216IPR003441NAC domain
PfamPF023651.3E-1359197IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 408 aa     Download sequence    Send to blast
MTGPSWLIDY KRMASKIKNA SAPTHHTTHT WKSNPTKECP KCNYIIDNSD VVDEWPGLPK  60
GVKFDPSDQE LLWHLLAKIG KVGVKPHPFI DEFIPTIDSN EGLCCTHPQK LPGVKQDGSV  120
SHFFHRTFKA YTTGTKKRRK INTDELGEVR WNKTGKTKAV VIGGTHLGCK KIMVMYASNV  180
KGGKQEKTNW VMHQYHVGTG EDEKDSEFVV SKLFYQQQPK AGEKISEDMG DHMEPVYAVV  240
DLADCPPLMD LSSLPLEEDN SNQEAVQKSE HNFDQANSHC EVKAKEDINH PASEKAEDED  300
RHPSQDPNWW EGESQFMLNS QQLAECMSIC DEFLQSQNSS GSGDEPGKSR PCLAEYAQLP  360
ADDLKKDLEE CQKLDVSNDT NLELECTPEF RLSQLDCYAT TWIEGKI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1135139KKRRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.352970.0callus
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004955196.10.0PREDICTED: NAC domain-containing protein 8-like
SwissprotQ6NQK21e-134NAC8_ARATH; NAC domain-containing protein 8
TrEMBLK3YYT80.0K3YYT8_SETIT; Uncharacterized protein
STRINGSi019444m0.0(Setaria italica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP67853651
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25580.11e-135NAC family protein