PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG332700.2.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family C2H2
Protein Properties Length: 346aa    MW: 38663.2 Da    PI: 7.5919
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG332700.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.70.00046082323
                         ET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2  3 Cp..dCgksFsrksnLkrHirtH 23
                         C+   Cgk+F +   L++H  +H
  Pavir.1KG332700.2.p 60 CSyeGCGKTFFDAGALRKHAHVH 82
                         77779**************9887 PP

2zf-C2H215.26.4e-0587111123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          y C+  +Cgk F ++s LkrH   H
  Pavir.1KG332700.2.p  87 YICHyeNCGKKFLDSSKLKRHFLIH 111
                          89*******************8877 PP

3zf-C2H221.84.8e-07117141123
                          EEET..TTTEEESSHHHHHHHHHHT CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                          ++Cp   Cgk Fs   nLk H++tH
  Pavir.1KG332700.2.p 117 FVCPheGCGKAFSLDFNLKAHMKTH 141
                          89**********************9 PP

4zf-C2H219.23.3e-06147172123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          ++C+   Cg++F++ s L+ Hir  H
  Pavir.1KG332700.2.p 147 HVCQypECGRRFTQESKLRAHIRAqH 172
                          689999*****************888 PP

5zf-C2H215.64.7e-05216241123
                          EEET..TTTEEESSHHHHHHHHHH.T CS
              zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                          y+Cp   C+k + + + L+ H+++ H
  Pavir.1KG332700.2.p 216 YVCPyeGCDKAYIHEYKLNLHLKKeH 241
                          99*********************999 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.602.2E-135484IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.7625887IPR007087Zinc finger, C2H2
SMARTSM003550.00325882IPR015880Zinc finger, C2H2-like
SuperFamilySSF576671.01E-65983No hitNo description
PROSITE patternPS0002806082IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.607.2E-1485107IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.01387111IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015714.06687116IPR007087Zinc finger, C2H2
PROSITE patternPS00028089111IPR007087Zinc finger, C2H2
SuperFamilySSF576672.61E-1498150No hitNo description
Gene3DG3DSA:3.30.160.604.1E-20108144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015712.321117146IPR007087Zinc finger, C2H2
SMARTSM003554.3E-4117141IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280119141IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.8E-8146169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.0047147172IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.24147172IPR007087Zinc finger, C2H2
PROSITE patternPS000280149172IPR007087Zinc finger, C2H2
SuperFamilySSF576674.71E-7149172No hitNo description
Gene3DG3DSA:3.30.160.601.4E-9208238IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.71E-7211238No hitNo description
PROSITE profilePS501578.891216246IPR007087Zinc finger, C2H2
SMARTSM003550.0028216241IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280218241IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MQAAARRRFR VPQDLVVAGG PCALFKWVRE DRLAALKAKD KEQGAESAIP EPNTEVLFLC  60
SYEGCGKTFF DAGALRKHAH VHGERQYICH YENCGKKFLD SSKLKRHFLI HTGEKNFVCP  120
HEGCGKAFSL DFNLKAHMKT HSADNYHVCQ YPECGRRFTQ ESKLRAHIRA QHEKVVGLQN  180
PGPSTVNHSA LGDYRQPPKP VKVSATPPAP SAERPYVCPY EGCDKAYIHE YKLNLHLKKE  240
HPNHYQDGGP QGAAPSSKRS ISKSSNRSKP DVLAGMPPTK IPKRKGGYAA PLPAVSVPEE  300
HQWSRKVAYE DDSEETEEEG DNDVEDGWRY NKAASSDDEE TEDEE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ubd_C3e-34511682114PROTEIN (YY1 ZINC FINGER DOMAIN)
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pvr.153440.0leaf
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Rapidly induced following seed germination, especially in tender cotyledons. {ECO:0000269|PubMed:26961720}.
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, to a lower extent in seedlings, stems and leaves, and, at low levels, in roots and senescent leaves. {ECO:0000269|PubMed:26961720}.
Functional Description ? help Back to Top
Source Description
UniProtDual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG332700.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9668930.0EU966893.1 Zea mays clone 297982 transcription repressor TRM protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025810580.10.0zinc finger transcription factor YY1
SwissprotQ2V3L31e-100YY1_ARATH; Zinc finger transcription factor YY1
TrEMBLA0A2T7F7J30.0A0A2T7F7J3_9POAL; Uncharacterized protein
STRINGPavir.Ab01903.1.p0.0(Panicum virgatum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G06634.13e-99C2H2 family protein
Publications ? help Back to Top
  1. Kumekawa N,Hosouchi T,Tsuruoka H,Kotani H
    The size and sequence organization of the centromeric region of Arabidopsis thaliana chromosome 4.
    DNA Res., 2001. 8(6): p. 285-90
    [PMID:11853315]
  2. Li T,Wu XY,Li H,Song JH,Liu JY
    A Dual-Function Transcription Factor, AtYY1, Is a Novel Negative Regulator of the Arabidopsis ABA Response Network.
    Mol Plant, 2016. 9(5): p. 650-661
    [PMID:26961720]
  3. Wu XY,Li T
    A Casein Kinase II Phosphorylation Site in AtYY1 Affects Its Activity, Stability, and Function in the ABA Response.
    Front Plant Sci, 2017. 8: p. 323
    [PMID:28348572]