PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Pavir.1KG181400.1.p
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Panicodae; Paniceae; Panicinae; Panicum
Family BES1
Protein Properties Length: 392aa    MW: 39499.8 Da    PI: 9.4154
Description BES1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Pavir.1KG181400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF822148.65.2e-4639134498
               DUF822   4 grkptwkErEnnkrRERrRRaiaakiyaGLRaqGnyklpkraDnneVlkALcreAGwvvedDGttyrkgskpl.eeaeaagssasaspes 92 
                           r  +  ErEnn+rRERrRR ++++i+aGLR++Gny lp ++DnneVl+ALc eAGw+ve+DGttyr+g++p+ +     g sa +sp s
  Pavir.1KG181400.1.p  39 VRVTSFSERENNRRRERRRRLVTSRIFAGLRNHGNYILPRHCDNNEVLRALCDEAGWIVEPDGTTYRRGCRPPpHMRGGFGGSAPVSPGS 128
                          5777889******************************************************************666667899******** PP

               DUF822  93 slqssl 98 
                          s+  ++
  Pavir.1KG181400.1.p 129 SYPVTP 134
                          *98544 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF056875.0E-4340134IPR008540BES1/BZR1 plant transcription factor, N-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 392 aa     Download sequence    Send to blast
MNGGGMVGAG VGAGAGGSSG GGGDEGRGAG RSGNGSGPVR VTSFSERENN RRRERRRRLV  60
TSRIFAGLRN HGNYILPRHC DNNEVLRALC DEAGWIVEPD GTTYRRGCRP PPHMRGGFGG  120
SAPVSPGSSY PVTPTAPYGM GSGPSSYLTL GGGGGLFYGA AARGAAGSNG LADWFRRLPS  180
APDSGASSST SAPVTPQNGS PPQTMFERWA AENNAAAGGV SNLQPRRAAG LSRYAFPQQP  240
ITMPPSPVGG GAPVDPLRLL AGIQISTAAG AAAAANNNSR VRAYSPLGTP ALPSLFGAGA  300
PSFMLRAPGP VLQVSGGPWA PPVPAPAACA GGPWAAPAPA PAAWAGGGGD VEMAPREFSF  360
AWEGEAVSED YADEDALELT LGNSRTRADR A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zd4_A8e-2060112392444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_B8e-2060112392444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_C8e-2060112392444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
5zd4_D8e-2060112392444Maltose-binding periplasmic protein,Protein BRASSINAZOLE-RESISTANT 1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapPavir.1KG181400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025819084.11e-140protein BZR1 homolog 4-like
TrEMBLA0A3L6QEY51e-143A0A3L6QEY5_PANMI; Uncharacterized protein
STRINGPavir.Ab01225.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP1866659
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78700.12e-26BES1/BZR1 homolog 4