PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T036500.1
Common NamePOPTR_0003s00210g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 106aa    MW: 11642.2 Da    PI: 7.613
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T036500.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B333.85.9e-11799594
                     -..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS....-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
               B3  5 ltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesg....rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92
                      ++s  l++g lvlp++   e      g ke s   ++e+  g       ++ +  + +sg+ v+t+GW + +++ gL++gD+v+F+ +++ ++++
  Potri.T036500.1  7 KLTSIDLERG-LVLPRDSNLEPlqpfHGTKELS--TIVESAAGtrlpDPVTIHC--STRSGKLVFTRGWHDIARDAGLRSGDIVTFYQEENGGAQY 97
                     4456666666.8888887655578775555554..6667888855444444555..999999*************************666566555 PP

                     EE CS
               B3 93 vv 94
                     ++
  Potri.T036500.1 98 KM 99
                     54 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.41E-93100IPR015300DNA-binding pseudobarrel domain
CDDcd100174.83E-83101No hitNo description
Gene3DG3DSA:2.40.330.101.1E-133101IPR015300DNA-binding pseudobarrel domain
PfamPF023627.1E-8599IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MEIFTVKLTS IDLERGLVLP RDSNLEPLQP FHGTKELSTI VESAAGTRLP DPVTIHCSTR  60
SGKLVFTRGW HDIARDAGLR SGDIVTFYQE ENGGAQYKMR VKNVG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T036500.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2170361e-130AC217036.1 Populus trichocarpa clone POP039-B10, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A2K1R9252e-72A0A2K1R925_POPTR; Uncharacterized protein
STRINGPOPTR_0003s00210.14e-72(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1621222