PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.T034600.1
Common NamePOPTR_0002s20950g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 491aa    MW: 54114 Da    PI: 8.7856
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.T034600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.21.4e-05628123
                     EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                     ++C++C+k F r  nL+ H r H
  Potri.T034600.1  6 FVCEICNKGFQRDQNLQLHRRGH 28
                     89*******************88 PP

2zf-C2H215.74.4e-0582104123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      +kC +C+k +  +s+ k H++t+
  Potri.T034600.1  82 WKCDKCSKKYAVQSDWKAHQKTC 104
                      58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.601.6E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.35E-8528No hitNo description
SMARTSM003550.017628IPR015880Zinc finger, C2H2-like
PfamPF121717.8E-5628IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.949628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
SMARTSM00355984777IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.605.6E-570103IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576674.35E-877103No hitNo description
SMARTSM003559482102IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MATNRFVCEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTTT EVRKKVYICP EPTCVHHNPA  60
RALGDLTGIK KHFSRKHGEK KWKCDKCSKK YAVQSDWKAH QKTCGTREYK CDCGTIFSRR  120
DSFITHRAFC DALAEENNKV NQGVMANMGS NLLNQMPELM SSMPLSANTS TSIGIPDFNC  180
FDPKNPLKSL PQELVPIPFK SMNMAGGMFS SSSGTLFGSP RSISSTSSLQ LSSNGSSGLH  240
YLQDNKNGCQ ISATAHMSAT ALLQKAAQMG ATASNSINSP MMQKSFASSM AGPDQLSSIR  300
SSTYGGIQQH NTSYDDLPPQ ASDQTSMAGM INGVGGFNNQ PLQRGPQEMS QIFDTAGTGS  360
SAMNDMAMFA SMFMSNDQNP GFIKNMEQED SGNSGLMHGR NALMERNPTG PSRFAGTPIE  420
GGDMMTRDFM GIGGARPTNF QDQQQQHQPR LEMEAMSQHQ RMQMMNPYHQ QQQPSLREPA  480
IEKPSSIWDV *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C5e-3478141366Zinc finger protein JACKDAW
5b3h_F5e-3478141366Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
13244KLRQRTTTEVRKK
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.T034600.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024447996.10.0protein indeterminate-domain 2
SwissprotQ9SCQ67e-98IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3N7FC770.0A0A3N7FC77_POPTR; Uncharacterized protein
STRINGPOPTR_0002s20950.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G50700.14e-86indeterminate(ID)-domain 2
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]