PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.019G053200.2
Common NamePOPTR_0019s08030g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 446aa    MW: 48459.8 Da    PI: 8.5102
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.019G053200.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.73e-115480127
                        --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHgp 27
                        ++++ C+++ rtG C++G++C+F+H+p
  Potri.019G053200.2 54 PGEPDCSYYIRTGLCRFGPTCRFNHPP 80
                        5789*********************97 PP

2zf-CCCH38.81.5e-12101125327
                         S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                         +++C+++++tGtCk+G++CkF+H++
  Potri.019G053200.2 101 QPECQYYLKTGTCKFGATCKFHHPR 125
                         799********************96 PP

3zf-CCCH33.57.1e-11149171527
                         --SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                         +C +++rtG+Ck+G++CkF+H++
  Potri.019G053200.2 149 ECAYYLRTGQCKFGSTCKFHHPQ 171
                         5********************97 PP

4zf-CCCH37.93.1e-12306332127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         +++++C+f+++tG Ck+G+ C+F+H++
  Potri.019G053200.2 306 PGQPECQFYMKTGDCKFGAVCRFHHPR 332
                         5789*********************96 PP

5zf-CCCH40.25.4e-13352378127
                         --S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                         ++++lC f++r+G+Ck+G++CkF+H++
  Potri.019G053200.2 352 PGEPLCIFYSRYGICKFGPSCKFHHPM 378
                         589**********************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.3E-55380IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.845381IPR000571Zinc finger, CCCH-type
PfamPF006428.4E-85580IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-55881IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.0E-45979IPR000571Zinc finger, CCCH-type
SMARTSM003565.0E-698125IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.15998126IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-10101125IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6102127IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.8E-5104125IPR000571Zinc finger, CCCH-type
SMARTSM003561.7E-4144171IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6144172IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.568144172IPR000571Zinc finger, CCCH-type
PfamPF006426.8E-9149171IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.0E-4150170IPR000571Zinc finger, CCCH-type
SMARTSM003567.8E-6305332IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.596305333IPR000571Zinc finger, CCCH-type
PfamPF006429.6E-9307332IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.07E-5309335IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.9E-5311333IPR000571Zinc finger, CCCH-type
SMARTSM003564.2E-7351378IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.784351379IPR000571Zinc finger, CCCH-type
PfamPF006422.5E-10353378IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.46E-6354378IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.4E-4356376IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0017148Biological Processnegative regulation of translation
GO:0005829Cellular Componentcytosol
GO:0010313Molecular Functionphytochrome binding
GO:0046872Molecular Functionmetal ion binding
GO:0048027Molecular FunctionmRNA 5'-UTR binding
Sequence ? help Back to Top
Protein Sequence    Length: 446 aa     Download sequence    Send to blast
MDFDAGIPMS RGGGGLPAVT EETSLSPSLS EDAMWQMNLR SSETMEAGPY PERPGEPDCS  60
YYIRTGLCRF GPTCRFNHPP NRKLAIAAAR MKGEFPERIG QPECQYYLKT GTCKFGATCK  120
FHHPRDKAGV SGRVSLNILG YPLRLNEMEC AYYLRTGQCK FGSTCKFHHP QPANVMVPLR  180
GSPVYPTVNS PTTPGQQSYP GGLATNWSRA SFITSPRWQA PSNYTPLILP QGVVSVPGWN  240
AYSGQVGSVS SPESQQQTGN SQIYGTSRQN ESVNAGSQGT FSPYRSDSVP MGFYALQRES  300
VFPERPGQPE CQFYMKTGDC KFGAVCRFHH PRERLIPAPD CVLSAIGLPL RPGEPLCIFY  360
SRYGICKFGP SCKFHHPMGI FTYNLTASSS ADAPVRRLLG SSSGSAALTL SSEGLVEAGS  420
TKPRRLSLSE PRQMPPGDDN IDTGG*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.33710.0bud| catkin
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.019G053200.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2164700.0AC216470.1 Populus trichocarpa clone POP037-N11, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325901.30.0zinc finger CCCH domain-containing protein ZFN-like isoform X1
SwissprotQ9SWF90.0ZFNL_PEA; Zinc finger CCCH domain-containing protein ZFN-like
TrEMBLA0A2K1WQ170.0A0A2K1WQ17_POPTR; Uncharacterized protein
STRINGcassava4.1_007759m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF53213355
Representative plantOGRP12471750
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02830.10.0zinc finger protein 1