PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G129800.5
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family YABBY
Protein Properties Length: 134aa    MW: 14930.8 Da    PI: 7.3922
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G129800.5genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY118.11.4e-3691266135
               YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekeesastsv 96 
                           eq+Cy+ CnfCn +lavsvP + lf +vtvrCGhCt+l svn+a a q l+ ++h++    +++ ++ + +  +     + +++ st +
  Potri.018G129800.5   9 PHEQLCYIPCNFCNIVLAVSVPCSNLFDIVTVRCGHCTNLWSVNMAAAFQSLSWQDHVQ--ASNHISHDYRIDMGS---SSKFNNKISTRT 94 
                         579*****************************************************944..445565555544322...222223333333 PP

               YABBY  97 sseklsenedeevprvppvirPPekrqrvPsaynrfike 135
                         +++       + v++   v+rPPekrqrvPsayn+fik 
  Potri.018G129800.5  95 PAT-------NIVTQERVVNRPPEKRQRVPSAYNQFIKG 126
                         332.......2333334579*****************96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.5E-429126IPR006780YABBY protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 134 aa     Download sequence    Send to blast
MSSCVDVVPH EQLCYIPCNF CNIVLAVSVP CSNLFDIVTV RCGHCTNLWS VNMAAAFQSL  60
SWQDHVQASN HISHDYRIDM GSSSKFNNKI STRTPATNIV TQERVVNRPP EKRQRVPSAY  120
NQFIKGDSED QGQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.73860.0bud
Functional Description ? help Back to Top
Source Description
UniProtPromotes adaxial cell identity. Regulates the initiation of embryonic shoot apical meristem (SAM) development. {ECO:0000269|PubMed:19837869}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G129800.5
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0902162e-54BT090216.1 Soybean clone JCVI-FLGm-3N14 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324648.28e-90axial regulator YABBY 5
SwissprotQ8GW461e-51YAB5_ARATH; Axial regulator YABBY 5
TrEMBLB9IMX92e-88B9IMX9_POPTR; Uncharacterized protein
STRINGPOPTR_0018s12990.13e-89(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.25e-54YABBY family protein
Publications ? help Back to Top
  1. Husbands AY,Benkovics AH,Nogueira FT,Lodha M,Timmermans MC
    The ASYMMETRIC LEAVES Complex Employs Multiple Modes of Regulation to Affect Adaxial-Abaxial Patterning and Leaf Complexity.
    Plant Cell, 2015. 27(12): p. 3321-35
    [PMID:26589551]