PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G094300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 169aa    MW: 18643.6 Da    PI: 8.5045
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G094300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.90.000164365123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C + F ++  L  H++ H
  Potri.018G094300.1 43 FSCNYCRRKFYSSQALGGHQNAH 65
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576672.15E-64070No hitNo description
PROSITE profilePS5015711.0534370IPR007087Zinc finger, C2H2
PROSITE patternPS0002804565IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 169 aa     Download sequence    Send to blast
MDFQPNTSLH LSLPSNQLNL ELVLEPSSSS SSSPHSPAEP RIFSCNYCRR KFYSSQALGG  60
HQNAHKLERT LAKKSREMSS SVRAHGRSNP RSGSSSCMSG PSFPRHHEPA LARFEHHGHA  120
GRFVGDASYD RTEMNYGSIE GVGGSWSLVY RTENVQEELS QLDLSLRL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G094300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024446546.11e-120zinc finger protein 7
TrEMBLA0A2K1WYG71e-119A0A2K1WYG7_POPTR; Uncharacterized protein
STRINGPOPTR_0006s18540.13e-71(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF96192334
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57520.14e-32zinc finger protein 2