PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G091600.1
Common NamePOPTR_0018s09900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family AP2
Protein Properties Length: 544aa    MW: 59216.7 Da    PI: 7.4732
Description AP2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G091600.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2483.2e-15168227155
                 AP2   1 sgykGVrwdkkrgrWvAeIrd.pse.ng..kr.krfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV++++++gr++A+++d  +   g  ++ ++++lg ++ +e+Aa+a++ a++k++g
  Potri.018G091600.1 168 SIYRGVTRHRWTGRYEAHLWDnSCRrEGqsRKgRQVYLGGYDKEEKAARAYDLAALKYWG 227
                         57*******************666664477446*************************98 PP

2AP247.15.8e-15270321155
                 AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                         s y+GV+++++ grW A+I  +     +k  +lg+f t eeAa+a++ a+ k++g
  Potri.018G091600.1 270 SIYRGVTRHHQHGRWQARIGRVAG---NKDLYLGTFSTQEEAAEAYDIAAIKFRG 321
                         57****************988532...5************************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.44E-17168237IPR016177DNA-binding domain
CDDcd000186.31E-23168237No hitNo description
PfamPF008473.1E-12168227IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-16169236IPR001471AP2/ERF domain
PROSITE profilePS5103219.23169235IPR001471AP2/ERF domain
SMARTSM003804.6E-30169241IPR001471AP2/ERF domain
PRINTSPR003672.4E-6170181IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-18270331IPR016177DNA-binding domain
CDDcd000183.49E-25270331No hitNo description
PfamPF008477.1E-10270321IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.6E-18271330IPR001471AP2/ERF domain
SMARTSM003801.5E-33271335IPR001471AP2/ERF domain
PROSITE profilePS5103219.045271329IPR001471AP2/ERF domain
PRINTSPR003672.4E-6311331IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 544 aa     Download sequence    Send to blast
MDSTSHQNWL GFSLSNHHHM NNINIPSSSD SSNLCLFEAF NTTPTTTTSA QEDNAVAACR  60
PTDISLFTTS GPKLEDFLGC CTTTPPSQQP LGGQFSAETP GTTATTVSDN SSSEIYDSEL  120
KTIAASFLRG YSSNDHQQTG SSQKHQQLLV QSEHAPKKTV DTFGQRTSIY RGVTRHRWTG  180
RYEAHLWDNS CRREGQSRKG RQVYLGGYDK EEKAARAYDL AALKYWGPTT TTNFPVSNYE  240
KELEGMKHMT RQEFVASLRR KSSGFSRGAS IYRGVTRHHQ HGRWQARIGR VAGNKDLYLG  300
TFSTQEEAAE AYDIAAIKFR GLNAVTNFDM SRYDVKSIAN SNLPIGGISG KSKNSSESVS  360
DSKSIDVSRS DDRDLSSASS VTFASQPTTS TLSFAMPIKQ DPSDYWTNIL GYQNSTTTMN  420
NTKNSSSIVA PSTLLQSSTS FHAFQGPTAF SMDFNTNSSV NESNNSGLLF NGGYIQQQSG  480
GDGISTSSSS SSIPFATPIA LHGNGSSYEG NSSYGSWISQ SLHSFQSAKP NLSVYQTPIF  540
GME*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.70840.0stem
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1453130.0EF145313.1 Populus trichocarpa clone WS01123_C06 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002325046.20.0hypothetical protein POPTR_0018s09900g
SwissprotQ6PQQ31e-167AIL5_ARATH; AP2-like ethylene-responsive transcription factor AIL5
TrEMBLB9ILY00.0B9ILY0_POPTR; Uncharacterized protein
STRINGPOPTR_0018s09900.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP11217209
FabidsOGEF125622735
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57390.11e-143AINTEGUMENTA-like 5