PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G075500.2
Common NamePOPTR_0018s06120g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 343aa    MW: 39956 Da    PI: 4.3876
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G075500.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix36.21.6e-11109190186
            trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                         +W+++e  +L+e+  ++  +l+r++l+  +W +v++k+ +  ++er+  qC++ ++ l++rykk+k+  ++      s+++yf++++
  Potri.018G075500.2 109 EWSEHEKFVLLEVWGDKFLQLGRNSLRSEDWVDVAEKVsETSKIERNEAQCRQMMDVLKRRYKKEKAKGGN-----FSKWAYFNKMD 190
                         5*************************************555678***********************9998.....469*******8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138379.4E-19108192No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 343 aa     Download sequence    Send to blast
MDYIEDDPRY PPKSYSLNRS KKHPLYPQRQ TPTLHYNYDY DYDYDYLDVD EDGDDYNPGG  60
GYARKFQRNE EAFERYPKRQ RLKNPVSNYE FAPRNPRLLA YGDGNSAVEW SEHEKFVLLE  120
VWGDKFLQLG RNSLRSEDWV DVAEKVSETS KIERNEAQCR QMMDVLKRRY KKEKAKGGNF  180
SKWAYFNKMD MLMKQESGTV GGFSLACGVD SGEYVFMDTR VYLDRANMND EMRDSPCESE  240
EEEEEEEGGG SAGNDGMKGL RVLAESVQKF GEIYGKIESS KREQMMELER MRIEFQMDLE  300
LQKKQILDRA QAEIAKIREE DDDEEDEDNS DDDDVSGGNI SK*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankGU2883880.0GU288388.1 Populus balsamifera isolate STL13 haplotype A unknown protein gene, partial sequence.
GenBankGU2883860.0GU288386.1 Populus balsamifera isolate POR11 haplotype A unknown protein gene, partial sequence.
GenBankGU2883840.0GU288384.1 Populus balsamifera isolate KUU07 haplotype A unknown protein gene, partial sequence.
GenBankGU2883820.0GU288382.1 Populus balsamifera isolate HAY07 haplotype A unknown protein gene, partial sequence.
GenBankGU2883800.0GU288380.1 Populus balsamifera isolate GIL14 haplotype A unknown protein gene, partial sequence.
GenBankGU2883780.0GU288378.1 Populus balsamifera isolate GAL12 haplotype A unknown protein gene, partial sequence.
GenBankGU2883760.0GU288376.1 Populus balsamifera isolate FBK13 haplotype A unknown protein gene, partial sequence.
GenBankGU2883750.0GU288375.1 Populus balsamifera isolate WHR03 haplotype B unknown protein gene, partial sequence.
GenBankGU2883740.0GU288374.1 Populus balsamifera isolate WHR03 haplotype A unknown protein gene, partial sequence.
GenBankGU2883730.0GU288373.1 Populus balsamifera isolate RNA13 haplotype B unknown protein gene, partial sequence.
GenBankGU2883720.0GU288372.1 Populus balsamifera isolate RNA13 haplotype A unknown protein gene, partial sequence.
GenBankGU2883710.0GU288371.1 Populus balsamifera isolate NWL07 haplotype B unknown protein gene, partial sequence.
GenBankGU2883700.0GU288370.1 Populus balsamifera isolate NWL07 haplotype A unknown protein gene, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324407.10.0hypothetical protein POPTR_0018s06120g
TrEMBLB9ILJ80.0B9ILJ8_POPTR; Uncharacterized protein
STRINGPOPTR_0018s06120.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24490.16e-85Trihelix family protein