PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G052200.1
Common NamePOPTR_0018s05280g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 520aa    MW: 56705.5 Da    PI: 8.9776
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G052200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H219.62.5e-067294123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        + C++C+k F+r  nL+ H r H
  Potri.018G052200.1 72 FICEICNKGFKRDQNLQLHRRGH 94
                        89*******************88 PP

2zf-C2H212.50.00044148170123
                         EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                         +kC++C+k++  +s+ k H + +
  Potri.018G052200.1 148 WKCEKCSKRYAVQSDWKAHSKIC 170
                         58*****************9876 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.160.606.2E-67194IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-77194No hitNo description
PfamPF121712.0E-57294IPR022755Zinc finger, double-stranded RNA binding
PROSITE profilePS5015710.8667294IPR007087Zinc finger, C2H2
SMARTSM003550.0117294IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002807494IPR007087Zinc finger, C2H2
SMARTSM00355100113143IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.607.5E-5136169IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.27E-7143168No hitNo description
SMARTSM00355130148168IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 520 aa     Download sequence    Send to blast
MDENMSNLTS ASGEVSASSG SRIETGAIYP QHSFDSTNQP PPKKKKSFPG NPDPDAEVIA  60
LSPNSLQATN RFICEICNKG FKRDQNLQLH RRGHNLPWKL KQRTNKEVKK KVYVCPEVTC  120
VHHDPSRALG DLTGIKKHFS RKHGEKKWKC EKCSKRYAVQ SDWKAHSKIC GTREYRCNCG  180
TLFSRRDSFI THRAFCDALA EESVRAITVN PILSSQQPGS SASHLINLQA LSVKREHDQN  240
QHHFNPRPEY SIPPWLVFPP IGDAGTGPPQ INLSSQLFPE NFNQSFLQHG NPSTNPTVLP  300
PFQSASTVSP HMSATALLQK AAQMGVTMSK PSPPAAAAAI LRPHQGHMSN LNPGFSSTLP  360
AVTSGLFLSS REGMGSGFGH GLVSFENKAA AVTSGIMEHL AASDAGGPSL VHDMMSSLSS  420
ASGFDGSSFD NEDFNGMLNP KRDGGNFQEI LSKSTESQFR RSDHDVRTSA VGSPHGGGND  480
DLTRDFLGLK AFPHKDWLDH INPSTYGQRN QNLPPPWQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C6e-34144205364Zinc finger protein JACKDAW
5b3h_F6e-34144205364Zinc finger protein JACKDAW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000305}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G052200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006371888.10.0protein indeterminate-domain 7
SwissprotQ8H1F51e-117IDD7_ARATH; Protein indeterminate-domain 7
TrEMBLA0A3N7G6880.0A0A3N7G688_POPTR; Uncharacterized protein
TrEMBLU5FFQ40.0U5FFQ4_POPTR; Uncharacterized protein
STRINGPOPTR_0018s05280.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF18134275
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G55110.11e-112indeterminate(ID)-domain 7
Publications ? help Back to Top
  1. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]