PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.018G047300.1
Common NamePOPTR_0018s08320g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 199aa    MW: 21702.4 Da    PI: 4.5831
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.018G047300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-181868155
                 AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                        ++ykGVr +k +g+Wv+eIr p++   r r++lg+++t+ +Aa+a +aa  +l+g
  Potri.018G047300.1 18 PKYKGVRKRK-WGKWVSEIRLPNS---RERIWLGSYDTPLKAARAFDAALYCLRG 68
                        79*****999.**********933...5*************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.26E-271878No hitNo description
PfamPF008472.1E-111868IPR001471AP2/ERF domain
PROSITE profilePS5103221.2061976IPR001471AP2/ERF domain
SMARTSM003801.3E-291982IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-191977IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.9E-281977IPR001471AP2/ERF domain
PRINTSPR003671.4E-82031IPR001471AP2/ERF domain
PRINTSPR003671.4E-84258IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MVKPSSSSGQ QSDRNHEPKY KGVRKRKWGK WVSEIRLPNS RERIWLGSYD TPLKAARAFD  60
AALYCLRGSG AKFNFPDNPP DIVGGQSLSS QEIQEVAARF ANEEPTSSST ATRGESSEHV  120
ENDTSSSSDG GAGDTIDWSF LNLLDSSEGA SDFGLYHGLD HMGGDYYPPP PPPSEYSIGG  180
DDHNGDEAYS QQSFLWNF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A8e-1519761472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12026KGVRKRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.018G047300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324785.11e-145ethylene-responsive transcription factor ERF017
SwissprotQ84QC27e-55ERF17_ARATH; Ethylene-responsive transcription factor ERF017
TrEMBLB9IKF61e-144B9IKF6_POPTR; Uncharacterized protein
STRINGPOPTR_0018s08320.11e-144(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF14793399
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G19210.17e-55ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Li SJ, et al.
    The Citrus transcription factor, CitERF13, regulates citric acid accumulation via a protein-protein interaction with the vacuolar proton pump, CitVHA-c4.
    Sci Rep, 2016. 6: p. 20151
    [PMID:26837571]
  3. Yin XR, et al.
    Involvement of an ethylene response factor in chlorophyll degradation during citrus fruit degreening.
    Plant J., 2016. 86(5): p. 403-12
    [PMID:27037684]