PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G142400.1
Common NamePOPTR_0017s01730g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family GRAS
Protein Properties Length: 491aa    MW: 54139.1 Da    PI: 4.9297
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G142400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS3551.1e-1081144902374
                GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                         +++++e+A a+ +g++    ++L+r+ + a+p+g++ qRl  y++ AL++r+++      k+ +++e      +e++ a++ ++++sP++k
  Potri.017G142400.1 114 KQTIIEAASAIYEGKTDVYPEILSRICQVANPQGNSGQRLMEYMLMALKSRVNS----AEKTPSVRELY---NKEHVDATQSLYDLSPCFK 197
                         57899************************************************9....44444555554...88999999*********** PP

                GRAS  93 fshltaNqaIleavege....erv.....HiiDfdisqGlQWpaLlqaLa.sRpegppslRiTgvgspesg..skeeleetgerLakfAee 171
                         +++++aN aI ea+ ++    +       H++Dfdi+qG+Q+++Ll+aL+  ++ +p+ ++iT+v++ ++g  +ke+l+ +ge L+++A++
  Potri.017G142400.1 198 LGFMAANLAIIEATREQgremN-ScsngfHVVDFDIGQGGQYMNLLHALSgLQNLKPAIVKITAVAADSNGgeEKERLRLVGETLSQLAQR 287
                         **************99975541.045556*********************66667888*********999999****************** PP

                GRAS 172 lgvpfefnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerfleale 262
                         l++++ fnv v+ rl++l+ e+L ++p+EalaVn++++l+r++desvs+e++rde+L+ vk+l P+vv++veqe+++n+++F++r+ e+++
  Potri.017G142400.1 288 LRLSLCFNV-VSCRLSELSRESLGCEPEEALAVNFAFKLYRMPDESVSTENPRDELLRRVKGLGPRVVTIVEQEMNTNTAPFMARVNESCS 377
                         ********9.799****************************************************************************** PP

                GRAS 263 yysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk..sdgyrv 351
                         yy alfds+++++ r+s+er+ vE+  lgr ivn vaceg++r+er+e ++kWr+r+++aGF+  p+s+ +a+++k+ l+ ++  + g++v
  Potri.017G142400.1 378 YYGALFDSINSTMERDSSERARVEEG-LGRTIVNSVACEGRDRIERCEVFGKWRARMGMAGFELKPMSQIVAESMKARLSLTNrvNPGFTV 467
                         **************************.**************************************************99999887889*** PP

                GRAS 352 eeesgslvlgWkdrpLvsvSaWr 374
                         +ee+g +++gWk+++L+++SaWr
  Potri.017G142400.1 468 KEENGGVCFGWKGKTLTVASAWR 490
                         **********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098547.48387468IPR005202Transcription factor GRAS
PfamPF035143.8E-106114490IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 491 aa     Download sequence    Send to blast
MNLMSSNGVI NNNNNNMMPY VNMLQNQNGG GNGVVMGQDR EKKMLNQLQE LEKQLLDDDD  60
DNQEGDDVSV ITNTNSEWSE TIQNLMSSCN NPISPSPTSS SSSSSSTVTT PVSKQTIIEA  120
ASAIYEGKTD VYPEILSRIC QVANPQGNSG QRLMEYMLMA LKSRVNSAEK TPSVRELYNK  180
EHVDATQSLY DLSPCFKLGF MAANLAIIEA TREQGREMNS CSNGFHVVDF DIGQGGQYMN  240
LLHALSGLQN LKPAIVKITA VAADSNGGEE KERLRLVGET LSQLAQRLRL SLCFNVVSCR  300
LSELSRESLG CEPEEALAVN FAFKLYRMPD ESVSTENPRD ELLRRVKGLG PRVVTIVEQE  360
MNTNTAPFMA RVNESCSYYG ALFDSINSTM ERDSSERARV EEGLGRTIVN SVACEGRDRI  420
ERCEVFGKWR ARMGMAGFEL KPMSQIVAES MKARLSLTNR VNPGFTVKEE NGGVCFGWKG  480
KTLTVASAWR *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A9e-4013649026375GRAS family transcription factor containing p
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.42280.0bud| catkin
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1469220.0EF146922.1 Populus trichocarpa clone WS01223_P18 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372449.10.0hypothetical protein POPTR_0017s01730g
SwissprotQ9FYR71e-170SCL8_ARATH; Scarecrow-like protein 8
TrEMBLB9MWZ80.0B9MWZ8_POPTR; Uncharacterized protein
STRINGPOPTR_0017s01730.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP7599918
FabidsOGEF62663151
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52510.11e-149SCARECROW-like 8