PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G082900.2
Common NamePOPTR_0017s11920g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ZF-HD
Protein Properties Length: 338aa    MW: 37233.9 Da    PI: 8.236
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G082900.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer108.15e-3468124459
         ZF-HD_dimer   4 vrYkeClkNhAaslGghavDGCgEfmpsegee.gtaaalkCaACgCHRnFHRrevee 59 
                         + YkeClkNhAa++Ggha+DGCgEfmps+ ++ +++++lkCaACgCHRnFHRre+e+
  Potri.017G082900.2  68 IAYKECLKNHAATIGGHALDGCGEFMPSPIAThTNPTSLKCAACGCHRNFHRREPED 124
                         68**************************999889********************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD1257745.0E-2268127IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PfamPF047707.3E-2868122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.5E-3070121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.43470121IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466891.39E-18198267IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.6E-30200268IPR009057Homeodomain-like
TIGRFAMsTIGR015652.7E-25206263IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MDMTTTTTTP TPTNNNNTNT PTPKSPEAYT ETPARIHDTK PLSFTNGVLK RHPPHHHHHH  60
FSPSPIVIAY KECLKNHAAT IGGHALDGCG EFMPSPIATH TNPTSLKCAA CGCHRNFHRR  120
EPEDSPPHTA TTTTIQYQSH HRHHPLPPPQ AQPLHNGSPN SASPPPISSS YYPSGPHMLL  180
ALSGGVSGLN ENANINVPPP VGSSPRKRFR TKFSQSQKER MYQFAERVGW KMQKRDEDLV  240
QEFCNEVGVD RGVLKVWMHN NKNSLGKKEH LNGNNNDILR SNNLENSDNS NNEANKNITN  300
DNNNGSEGLN HHHNHHHFEN ESHVGVHVGT NGSSSSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A1e-212072641875ZF-HD homeobox family protein
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Mostly expressed in flowers, stems and inflorescence and, to a lower extent, in leaves and stems. {ECO:0000269|PubMed:16428600}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00387DAPTransfer from AT3G28920Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G082900.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2272361e-136CU227236.1 Populus EST from severe drought-stressed leaves.
GenBankCU2288271e-136CU228827.1 Populus EST from severe drought-stressed leaves.
GenBankCU2290161e-136CU229016.1 Populus EST from severe drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002324056.30.0zinc-finger homeodomain protein 9
RefseqXP_006373321.20.0zinc-finger homeodomain protein 9
RefseqXP_024444049.10.0zinc-finger homeodomain protein 9
SwissprotQ9LHF05e-77ZHD9_ARATH; Zinc-finger homeodomain protein 9
TrEMBLA0A2K1X5120.0A0A2K1X512_POPTR; Uncharacterized protein
STRINGPOPTR_0017s11920.11e-179(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28920.11e-71homeobox protein 34
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]