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Plant Transcription
Factor Database
v4.0
Previous version: v1.0,
v2.0,
v3.0
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Transcription Factor Information
Basic
Information? help
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TF ID |
Potri.017G020300.1 |
Common Name | POPTR_0017s09470g |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
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Family |
GRAS |
Protein Properties |
Length: 388aa MW: 45368.3 Da PI: 7.1513 |
Description |
GRAS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Potri.017G020300.1 | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | GRAS | 217.8 | 5.6e-67 | 6 | 366 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdg.dpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91
e L+ecA+a+++gdl+ a++l +++ ++s ++ +++++++yf+eAL +rl++ ly p+ + + ++ l + P+l
Potri.017G020300.1 6 LEKLMECAQAIEDGDLKHADSLFKEIGLQSSIEAnLATRKVVKYFAEALVRRLYK----LYPRNPMPL-----VRFREDMDILGCKFEPFL 87
578****************************99956*******************....553333333.....333334444557889*** PP
GRAS 92 kfshltaNqaIleavegeervHiiDfdis.qGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfefnvl 181
f+ t ++a+ g+++vHiiDf++ Q ++L++ La+ ++ s RiT vg++ s++ l+ + L+k Ae+ +++fe+
Potri.017G020300.1 88 SFASYTIMPPFYDALRGKKQVHIIDFSVVvDIWQHATLMKVLANELGSRLSYRITFVGPKLSKHPGYLKLISLILTKTAENHHIDFEYGEY 178
***************************862568**************************9999*************************999 PP
GRAS 182 vakrledleleeLrvkp...gEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfd 269
+a++++++ +L++ + +Ea++V + ++lh+ll+ + + + v++ +k+l+P+v+v+veqeadhns+++++r+ ++++yys++fd
Potri.017G020300.1 179 LANSVDEIVGATLQLGRrskEEAVVVEWEFELHKLLAVPSDKFN---LVMSRLKDLKPEVMVIVEQEADHNSPDLMDRLGKSFKYYSVMFD 266
99******999998877778****************66665555...******************************************** PP
GRAS 270 sl.eaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslv 359
sl e k+ + ++ r+ Er ++r+i++vva eg +erhet ++Wr+rl +aGF+p+++ + +l ++ + y++ee++ +
Potri.017G020300.1 267 SLeEDKFEKLEDYRVLWERN-FRRQISKVVAEEGIGYVERHETWAQWRARLFRAGFHPARILFR----ETMLFNNKT-NQYKIEEKNRRPL 351
**999999999999999999.*************************************987654....455666655.66*********** PP
GRAS 360 lgWkdrpLvsvSaWr 374
l+ d p SaW+
Potri.017G020300.1 352 LCRLDYPFAISSAWK 366
**************8 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
GO:0009723 | Biological Process | response to ethylene |
GO:0009737 | Biological Process | response to abscisic acid |
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway |
GO:0009867 | Biological Process | jasmonic acid mediated signaling pathway |
GO:0009938 | Biological Process | negative regulation of gibberellic acid mediated signaling pathway |
GO:0010187 | Biological Process | negative regulation of seed germination |
GO:0042538 | Biological Process | hyperosmotic salinity response |
GO:2000033 | Biological Process | regulation of seed dormancy process |
GO:2000377 | Biological Process | regulation of reactive oxygen species metabolic process |
GO:0005634 | Cellular Component | nucleus |
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
Protein Sequence Length: 388 aa
Download sequence Send
to blast |
MAPPLLEKLM ECAQAIEDGD LKHADSLFKE IGLQSSIEAN LATRKVVKYF AEALVRRLYK 60 LYPRNPMPLV RFREDMDILG CKFEPFLSFA SYTIMPPFYD ALRGKKQVHI IDFSVVVDIW 120 QHATLMKVLA NELGSRLSYR ITFVGPKLSK HPGYLKLISL ILTKTAENHH IDFEYGEYLA 180 NSVDEIVGAT LQLGRRSKEE AVVVEWEFEL HKLLAVPSDK FNLVMSRLKD LKPEVMVIVE 240 QEADHNSPDL MDRLGKSFKY YSVMFDSLEE DKFEKLEDYR VLWERNFRRQ ISKVVAEEGI 300 GYVERHETWA QWRARLFRAG FHPARILFRE TMLFNNKTNQ YKIEEKNRRP LLCRLDYPFA 360 ISSAWKPDLT HDGEHTDSYN YICQSFY*
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