PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.017G013700.1
Common NamePOPTR_0017s04540g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 214aa    MW: 23153.7 Da    PI: 9.0393
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.017G013700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP266.17.1e-212777256
                 AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                        +y+GVr ++ +gr++AeIrdp   gk+ r++lg+f+taeeAaka+++a+++++g+
  Potri.017G013700.1 27 HYRGVRKRP-WGRYAAEIRDP---GKKSRVWLGTFDTAEEAAKAYDKAAREYRGA 77
                        69*******.**********8...557**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.87E-292784No hitNo description
PfamPF008473.5E-142776IPR001471AP2/ERF domain
PROSITE profilePS5103223.7882784IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.102.8E-322784IPR001471AP2/ERF domain
SuperFamilySSF541711.5E-222786IPR016177DNA-binding domain
SMARTSM003801.9E-352790IPR001471AP2/ERF domain
PRINTSPR003672.2E-112839IPR001471AP2/ERF domain
PRINTSPR003672.2E-115066IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 214 aa     Download sequence    Send to blast
MAPKKLNASN SGCFKKASGD HDKKEIHYRG VRKRPWGRYA AEIRDPGKKS RVWLGTFDTA  60
EEAAKAYDKA AREYRGAKAK TNFPFSGEVV NYDDDKQSSS HSSTVESSSS PVVSAAVTRQ  120
VGGGGVGGVV GMGGFPFVYQ QQQQNVNVVA PVWFFDSVRP EFVTQRFPVR FDQVGLESAG  180
GAQSDSDSSS MVDCQPRRSV LDLDLNLPPP LDA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gcc_A3e-222785261ETHYLENE RESPONSIVE ELEMENT BINDING FACTOR 1
2gcc_A3e-222788570ATERF1
3gcc_A3e-222788570ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.154630.0stem
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00542DAPTransfer from AT5G44210Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.017G013700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006372733.11e-156ethylene-responsive transcription factor 9
TrEMBLU5FHV11e-155U5FHV1_POPTR; Uncharacterized protein
STRINGPOPTR_0017s04540.11e-156(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF33034189
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G44210.11e-28erf domain protein 9