PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G083900.1
Common NamePOPTR_0016s08470g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family MYB_related
Protein Properties Length: 303aa    MW: 33123.7 Da    PI: 9.5632
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G083900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.63.2e-143882147
                        TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
     Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                        r +WT+eE++++++a +++  + Wk+I   +g  +t  q++s+ qky
  Potri.016G083900.1 38 RESWTEEEHDKFLEALQLFDRD-WKKIEDFVG-SKTVIQIRSHAQKY 82
                        789*****************77.*********.*************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.27E-173288IPR009057Homeodomain-like
PROSITE profilePS5129416.2913387IPR017930Myb domain
Gene3DG3DSA:1.10.10.602.8E-73688IPR009057Homeodomain-like
TIGRFAMsTIGR015579.1E-193685IPR006447Myb domain, plants
SMARTSM007171.1E-113785IPR001005SANT/Myb domain
PfamPF002497.2E-123882IPR001005SANT/Myb domain
CDDcd001672.37E-94083No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MATQPPLAAA AATGTTSATS SDGSGKKVRK PYTITKSRES WTEEEHDKFL EALQLFDRDW  60
KKIEDFVGSK TVIQIRSHAQ KYFLKVQKNG TIAHVPPPRP KRKASHPYPQ KASKIVLLPL  120
PVSMAYPSSM NTFTPGYAPW DETSMLITSA TRKIMPSQDE LANFHGAEAD IGTKDVSDIG  180
TKGVSRFSYN TVSGLGTSSR TLPSAEMPKQ GKQAPVLHGI PDFAEVYSFI GSVFDVETKG  240
HVKKLNEMDP INFETVLLLM RNLTVNLSSP DFEPIRKVMS SYDVNSKTVG VAALNQTNDI  300
AC*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.19590.0bud
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator of evening element (EE)-containing clock-controlled genes. Forms a negative feedback loop with APRR5. Regulates the pattern of histone H3 acetylation of the TOC1 promoter. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:21474993, ECO:0000269|PubMed:21483796, ECO:0000269|PubMed:23638299}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G083900.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Circadian-regulation. Peak of expression in the afternoon. Down-regulated by cold. {ECO:0000269|PubMed:21205033, ECO:0000269|PubMed:22902701, ECO:0000269|PubMed:23638299}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1483550.0EF148355.1 Populus trichocarpa x Populus deltoides clone WS01313_L11 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373855.10.0protein REVEILLE 8 isoform X1
RefseqXP_024442937.10.0protein REVEILLE 8 isoform X1
SwissprotQ8RWU31e-133RVE8_ARATH; Protein REVEILLE 8
TrEMBLA0A2K1XCP40.0A0A2K1XCP4_POPTR; Uncharacterized protein
STRINGPOPTR_0016s08470.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67353449
Representative plantOGRP9281558
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G09600.11e-133MYB_related family protein
Publications ? help Back to Top
  1. Manfield IW, et al.
    Arabidopsis Co-expression Tool (ACT): web server tools for microarray-based gene expression analysis.
    Nucleic Acids Res., 2006. 34(Web Server issue): p. W504-9
    [PMID:16845059]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Fogelmark K,Troein C
    Rethinking transcriptional activation in the Arabidopsis circadian clock.
    PLoS Comput. Biol., 2014. 10(7): p. e1003705
    [PMID:25033214]
  4. Xing H, et al.
    LNK1 and LNK2 recruitment to the evening element require morning expressed circadian related MYB-like transcription factors.
    Plant Signal Behav, 2015. 10(3): p. e1010888
    [PMID:25848708]
  5. Gray JA,Shalit-Kaneh A,Chu DN,Hsu PY,Harmer SL
    The REVEILLE Clock Genes Inhibit Growth of Juvenile and Adult Plants by Control of Cell Size.
    Plant Physiol., 2017. 173(4): p. 2308-2322
    [PMID:28254761]