PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G067300.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family YABBY
Protein Properties Length: 245aa    MW: 27269.1 Da    PI: 9.1736
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G067300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY160.91e-49762342169
               YABBY   2 dvfssseqvCyvqCnfCntilavsvPsts...lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnveke 89 
                         +++ +se+vCyv+CnfCntil+v++P ++   l+++vtvrCG C++lls+n     q  +++ +  +s k++ll ++           e +
  Potri.016G067300.1  76 SLDIASERVCYVHCNFCNTILVVNIPCSAnsiLLNTVTVRCGRCANLLSLNTGSLLQ--TSHPQ--NSHKQNLLYQD---------LSEGS 153
                         56789*********************75423378***************77665544..44443..22333332222.........22223 PP

               YABBY  90 esastsvsseklsenedeevprvppv.irPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfg 169
                         +s+s+ ++++ l+ +++e+  r+  v      k+qr Psaynrfikeei+rik +nP+ishreafs aaknWah+P+   g
  Potri.016G067300.1 154 QSSSSGNKVSALEPSQNEQPGRTVAVhAATGKKQQRSPSAYNRFIKEEIRRIKEKNPEISHREAFSNAAKNWAHLPHTQSG 234
                         33333333334444455555555554145578999******************************************8776 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046904.1E-5980235IPR006780YABBY protein
SuperFamilySSF470953.14E-8179231IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.7E-6187231IPR009071High mobility group box domain
CDDcd013903.66E-6189232No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 245 aa     Download sequence    Send to blast
MTIFIRLHAC VDVKKQKKES KYLHVSKRVA CFLYKLVLLH FPISLYINSS SCHFTFSSQD  60
SLLSGDHHLQ FCPRMSLDIA SERVCYVHCN FCNTILVVNI PCSANSILLN TVTVRCGRCA  120
NLLSLNTGSL LQTSHPQNSH KQNLLYQDLS EGSQSSSSGN KVSALEPSQN EQPGRTVAVH  180
AATGKKQQRS PSAYNRFIKE EIRRIKEKNP EISHREAFSN AAKNWAHLPH TQSGLTLNDT  240
GMDA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.90460.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed in subepidermal cells of anlagen regions, then in abaxial part of primordia and finally in differentiating organs. Levels decrease in differentiated organs. In embryo, expressed from the heart stage in the abaxial domain of the cotyledon primordia and decrease as the embryo matures. In stamen, expression restricted to the abaxial region differentiating into the connective. In gynoecium, expressed in the abaxial cell layers differentiating into the valves. {ECO:0000269|PubMed:10457020}.
UniprotTISSUE SPECIFICITY: Expressed at low levels in abaxial regions of lateral aerial organ primordia leading to cotyledons, leaves, flower meristems, sepals, petals, stamen and carpels, but not in roots. {ECO:0000269|PubMed:10457020}.
Functional Description ? help Back to Top
Source Description
UniProtInvolved in the abaxial cell fate determination during embryogenesis and organogenesis. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G067300.1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443210.11e-123putative axial regulator YABBY 2
SwissprotQ9XFB01e-45YAB2_ARATH; Putative axial regulator YABBY 2
TrEMBLA0A3N7G5231e-122A0A3N7G523_POPTR; Uncharacterized protein
STRINGPOPTR_0016s06760.11e-118(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF112434112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08465.13e-46YABBY family protein
Publications ? help Back to Top
  1. Sacharowski SP, et al.
    SWP73 Subunits of Arabidopsis SWI/SNF Chromatin Remodeling Complexes Play Distinct Roles in Leaf and Flower Development.
    Plant Cell, 2015. 27(7): p. 1889-906
    [PMID:26106148]