PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G028100.1
Common NamePOPTR_0016s02800g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 191aa    MW: 21448.1 Da    PI: 10.4565
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G028100.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.000183961123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC++C+  F+++  L  H++ H
  Potri.016G028100.1 39 FKCKYCKNKFTTSQALGGHQNAH 61
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.49E-63667No hitNo description
Gene3DG3DSA:3.30.160.604.6E-43765IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF139126.8E-63963IPR007087Zinc finger, C2H2
PROSITE profilePS5015711.2813966IPR007087Zinc finger, C2H2
PROSITE patternPS0002804161IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 191 aa     Download sequence    Send to blast
MSSTEQNRAA ENMNSNRSRL DLSLMDFFEG NSSGERRMFK CKYCKNKFTT SQALGGHQNA  60
HKRERAIEKR DKLLSEHMTY IPYPFWDMAI RSPMHYSSLG KNLGVDTSSM IHKPYSHWFR  120
GGFGQAGGRR YGGPSRPHIM NHQPSSSHMQ NGGLQPMPSN ILTNGNHTGG SSTSKNQKEE  180
GPRLELSLKL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G028100.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322594.21e-123zinc finger protein 3
TrEMBLB9IHJ11e-139B9IHJ1_POPTR; Uncharacterized protein
STRINGPOPTR_0016s02800.11e-140(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1747547
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G10970.11e-18C2H2 family protein