PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G018100.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 854aa    MW: 96769.6 Da    PI: 6.3133
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G018100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.88.8e-2499183290
                FAR1   2 fYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90 
                         fY++YA +vGF +++++s++sk+ng++++ +  Cs+ g+++e++ +     ++r+ t+t+Cka +++k+++d+kw+++ +++eHnHe++
  Potri.016G018100.4  99 FYRDYALSVGFGITIKASRRSKKNGKFIDVKIACSRFGSKRESSVT----VNPRSCTKTDCKAGMHMKRTEDEKWVIYGFVKEHNHEIC 183
                         9****************************************99888....99***********************************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.5E-2199183IPR004330FAR1 DNA binding domain
PfamPF105511.5E-22266358IPR018289MULE transposase domain
PfamPF044342.6E-6546580IPR007527Zinc finger, SWIM-type
PROSITE profilePS509669.087546582IPR007527Zinc finger, SWIM-type
SMARTSM005751.5E-6557584IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MEIDLELPSS DQEKLESGAN TNECILDSAS ELRGIDEAAS SCLVEEVVEA CGLNAIEGVI  60
DGGDKVEESG VGVDGVGEGG ISVPQNGLKF ETKEAAYAFY RDYALSVGFG ITIKASRRSK  120
KNGKFIDVKI ACSRFGSKRE SSVTVNPRSC TKTDCKAGMH MKRTEDEKWV IYGFVKEHNH  180
EICKEDYDNA TGRRNKQSGA VARPKKGLQL ALDEDDVKVM LEYFMCMQAE NSTFFYAIDL  240
DHEKRMRNVF WIDAKGRHDY HSVCDVVFFD TFYVSSKYKL PFVPIIGVNN HFQFVLLGCA  300
LIGEHSASSF LWLMHTWLKA VGGQAPKVII TDQERFLNEA VVDVFPDTLH YYSLWHVFSK  360
IPENLSPVMN QSEIFMLKFN KCIYQSQTDE QFEKRWWKMV DRFELREDEW VHSLYENRIK  420
WVPTFIRDIS LAGMSTTERS GSVASFFDKY IHREAVFKEF MEQYKAFLED GYEMEAKAEF  480
ETQNKQPALR SLSSFEKQAS TLYTDAIFKK FQVEVLGVVS CHLKKESEDE ATINFRVDDF  540
EERQNFLVSW NKSTMDICCI CRSFEYRGFL CKHAILVLQM SGVSNIPSRY ILKRWTKGAK  600
INQAVDKVSK SLHYRVQRFN DLCKQAIKLG KEGSLSKEAY DIAVRTLEEV LENCVGLNNS  660
VKSVLEPNTL DVLGFPGFEE ENCDNCLAKS SKKKRTYKKK KVYSEAGGIK IGLQESYQQM  720
DQINSRAHHN DNCYIPQQDT QEELGSRAPN LEGYYGSQEG APGVGQLNSI SPFRDGYYSN  780
QQGLPVLGQL HLIPTHVSHF GAPLSMQGLG QLGFRAPTMQ TSFSNLPDLE QPVSSTQFNG  840
IASKHLHDKH LSS*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in hypocotyls, rosette and cauline leaves, inflorescences stems, flowers and siliques. {ECO:0000269|PubMed:15591448}.
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription activator involved in regulating light control of development.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G018100.4
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Up-regulated in hypocotyls by far-red light treatment. {ECO:0000269|PubMed:15591448}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2300431e-174CU230043.1 Populus EST from mild drought-stressed leaves.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024443605.10.0protein FAR1-RELATED SEQUENCE 2 isoform X2
SwissprotQ3EBQ30.0FRS2_ARATH; Protein FAR1-RELATED SEQUENCE 2
TrEMBLA0A3N7G1T30.0A0A3N7G1T3_POPTR; Uncharacterized protein
STRINGPOPTR_0016s01960.10.0(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G32250.40.0FAR1-related sequence 2
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]