PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.016G007300.1
Common NamePOPTR_0016s00900g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 692aa    MW: 80354.4 Da    PI: 6.1865
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.016G007300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR170.54e-2268159190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                         ++Y ++A++ GFs+rk++s+ s + g i+kr+fvC+++g++  +kk+t +++r r++ r+gC+ak+ ++ke     ++w v ++++ HnHe
  Potri.016G007300.1  68 EYYGNFARKNGFSIRKERSRLSPQLG-IYKRDFVCYRSGFAPARKKSTAEHHRDRKSVRCGCDAKMYLSKEVvegVSQWFVVQFSNVHNHE 157
                         59********************8888.*******************************************99877789************* PP

                FAR1  89 la 90 
                         l 
  Potri.016G007300.1 158 LL 159
                         96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031015.8E-2068159IPR004330FAR1 DNA binding domain
PfamPF105516.8E-19291383IPR018289MULE transposase domain
PROSITE profilePS509669.866563598IPR007527Zinc finger, SWIM-type
PfamPF044344.4E-5570597IPR007527Zinc finger, SWIM-type
SMARTSM005750.0012573600IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 692 aa     Download sequence    Send to blast
MTSVPSKNIW IKRQQCPCGD WKCYVTCEGD VEETSVASQL EKNENFQSDS MVSPYVGMVF  60
KSDDDAFEYY GNFARKNGFS IRKERSRLSP QLGIYKRDFV CYRSGFAPAR KKSTAEHHRD  120
RKSVRCGCDA KMYLSKEVVE GVSQWFVVQF SNVHNHELLE DDQVRLLPAY RKIQEADQER  180
ILLLSKAGFP IHRIVKVLEL EKGIQGGQLP FLERDVRNFV QNRKKIVQEN DALLTEKREN  240
DSMELLEACK VTKEMDGDFV YDFTTDENDK VENIVWSYGD SVRAYTLFGD VVYFDTSYRS  300
ITYGMLLGVW LGIDNNGKTI FFGCVLLQDE TARSFAWALQ AFVHLMKGKC PQTILTDLEL  360
GLKDAVRSEL PSTRHVISIW NIQPKISSWF FLSLGARYPE FKSMFDDLYH AENADDFEHR  420
WSQMVSMFGF GSDKHIALLY SLRASWASSY MRGYFLARMA TSAYLKSVES FLKAICCAQT  480
CLRSFFEQVG SSSNFQNQLR QEMQYMLTKT CMPIEEHARN FLTPFAFNDF QHELVLSMQC  540
ALSEMPDGSY LVHHYKKMDV ERLVIWIPED EQIHCTCKEF ESSGMLCRHT LRVFILKNYF  600
QLPEKYYLSR WRRESSLVFY DNQDTQTNDD GWFQEFQSLT ETLLTESSIT KERSDYVHRE  660
LPKELKRLIS EVRKMPESDG AAMDLTLSPS S*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.016G007300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006373590.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_024443543.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_024443544.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_024443545.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_024443546.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_024443547.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
RefseqXP_024443549.10.0putative protein FAR1-RELATED SEQUENCE 10 isoform X1
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLA0A3N7G1P20.0A0A3N7G1P2_POPTR; Uncharacterized protein
STRINGEOY289580.0(Theobroma cacao)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]