PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G136300.1
Common NamePOPTR_0015s13840g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 251aa    MW: 26698.8 Da    PI: 7.1855
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G136300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP250.26.2e-1684132255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          +kGVr +  +g+Wv+eIr+p++   ++r++lg++ t+e+Aa a++ a+++l+g
  Potri.015G136300.1  84 TFKGVRLR--SGKWVSEIREPRK---TTRVWLGTYPTPEMAATAYDVAALALKG 132
                         58***986..5*********843...5************************987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.18E-1784142IPR016177DNA-binding domain
SMARTSM003804.7E-2784146IPR001471AP2/ERF domain
PROSITE profilePS5103219.34884140IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.6E-2584142IPR001471AP2/ERF domain
CDDcd000183.53E-2785142No hitNo description
PfamPF008473.2E-1085132IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MANPKPQADQ LPPLHSPILI PSPIRSSGQP FSSRHDEHPP RLIRSPIGFS SQPMSGRHGD  60
QSPRRPIRPP GGSSAQPASG RHPTFKGVRL RSGKWVSEIR EPRKTTRVWL GTYPTPEMAA  120
TAYDVAALAL KGTNTPLNFP ESILSYPTPA SASPGDIRAA AASAASARSP KRESGPNPEM  180
GQPETEGSSS IITADVQSGQ EIFDEEELLN MPNLLVDMAG GMLVSPPRIN TLSSDDSPGS  240
SDAESLWSYH *
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G136300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559360.0EF155936.1 Populus trichocarpa TINY-like protein (TINYL17) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321876.11e-179ethylene-responsive transcription factor ERF027
SwissprotQ9FJ902e-46ERF25_ARATH; Ethylene-responsive transcription factor ERF025
TrEMBLB9ID121e-178B9ID12_POPTR; Uncharacterized protein
STRINGPOPTR_0015s13840.11e-179(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF56232144
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52020.14e-39ERF family protein
Publications ? help Back to Top
  1. Li B, et al.
    Network-Guided Discovery of Extensive Epistasis between Transcription Factors Involved in Aliphatic Glucosinolate Biosynthesis.
    Plant Cell, 2018. 30(1): p. 178-195
    [PMID:29317470]