PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G105800.1
Common NamePOPTR_0015s11710g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Trihelix
Protein Properties Length: 300aa    MW: 34823.9 Da    PI: 7.3759
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G105800.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.91.1e-2238132186
            trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                         rWt+qe+ +Lie ++ +e+r++ ++         +++ +W++vs++++++g++r+p+qC+++w n+  ++kkik++e+++ +e++s + + 
  Potri.015G105800.1  38 RWTRQETFVLIESKKVVENRFQWSRrstsalgsdQIESKWDSVSSYCSQHGVNRGPVQCRKRWGNMLCDFKKIKTWESQQMNETESFWMMR 128
                         8*********************653345566666**********************************************99999999999 PP

            trihelix  83 dqle 86 
                         ++l+
  Potri.015G105800.1 129 NELR 132
                         9986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500907.27131104IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.604.7E-431105IPR009057Homeodomain-like
PfamPF138371.9E-1337128No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MVSESNDGQE TQELSRPNGV RKEQALDVDD KTKTRHPRWT RQETFVLIES KKVVENRFQW  60
SRRSTSALGS DQIESKWDSV SSYCSQHGVN RGPVQCRKRW GNMLCDFKKI KTWESQQMNE  120
TESFWMMRNE LRRERKLPSF FDKEVYYVLD GRVITTDAIP LSQITFKKQM DCIDRDEAAT  180
AEEEEEEHEY TEANLDSSQC ARAEDGTTKK QNLGTKTRKG SMSREGKKRR LSSDESEDPD  240
LEDRLIKVLG RNMSMLNSQL KAQNINCQLD REQRKDHNDS LVRALNKLTD AIVKIADKL*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002322303.10.0hypothetical protein POPTR_0015s11710g
SwissprotQ8VZ207e-83ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLB9IFK70.0B9IFK7_POPTR; Uncharacterized protein
STRINGPOPTR_0015s11710.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP17471336
FabidsOGEF21653375
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.11e-79Trihelix family protein