PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G089100.4
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 320aa    MW: 35592.2 Da    PI: 8.5646
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G089100.4genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-082341725
                        SGGGGTS--TTTTT-SS-S CS
             zf-CCCH  7 rffartGtCkyGdrCkFaH 25
                        ++++rtG CkyG  C+F+H
  Potri.015G089100.4 23 QYYLRTGGCKYGKACRFNH 41
                        59***************** PP

2zf-CCCH36.21e-117296226
                        -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                        +++ C f++r+G CkyG++Ck++H+
  Potri.015G089100.4 72 GEKQCEFYMRNGSCKYGATCKYNHP 96
                        6788********************9 PP

3zf-CCCH26.61e-08207232227
                         -S---SGGGGTS--TTTTT-SS-SSS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                         ++ lC++f+++G Ck+ ++Ck++H++
  Potri.015G089100.4 207 GQQLCSYFMKFGDCKFKSNCKYHHPK 232
                         788*********************96 PP

4zf-CCCH36.48.6e-12256277526
                         --SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                         +C++++r+G+Ck+G+ CkF H+
  Potri.015G089100.4 256 ICSYYSRYGICKFGPACKFDHS 277
                         8********************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010310.071644IPR000571Zinc finger, CCCH-type
SMARTSM003561.12043IPR000571Zinc finger, CCCH-type
PfamPF006427.2E-62341IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.4E-42444IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.2637098IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-57097IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.49E-67297IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-97296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-47595IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.615205233IPR000571Zinc finger, CCCH-type
SMARTSM003563.9E-4205232IPR000571Zinc finger, CCCH-type
PfamPF006425.5E-6207232IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.93E-6208234IPR000571Zinc finger, CCCH-type
SMARTSM003566.5E-5251278IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.68251279IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.63E-6253279IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.1E-5256278IPR000571Zinc finger, CCCH-type
PfamPF006424.0E-9256277IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MQYVWLKNDI LFLYYNYFLS LLQYYLRTGG CKYGKACRFN HTREKTFSVP PLKTPMPSIL  60
ELNFLGLPIR PGEKQCEFYM RNGSCKYGAT CKYNHPDPMA VGGSDLTSAF VNGGTTSLPA  120
PSPSSVGSWS SPRALNDPTP FVPYVFSPTR LPSQSSEWNG YQGTLYPPER SLHPPPSYAM  180
SNPATESNVY APQQQQTVVD EFPERPGQQL CSYFMKFGDC KFKSNCKYHH PKNRIPKSPS  240
LTLSDKGLPL RPDQIICSYY SRYGICKFGP ACKFDHSIQP PSSGSGDDQH TAFGNSVTQE  300
KARMAESGNG SDISVEQPV*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G089100.4
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2233370.0CU223337.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442496.10.0zinc finger CCCH domain-containing protein 67 isoform X1
SwissprotQ9STM41e-101C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2K1XK950.0A0A2K1XK95_POPTR; Uncharacterized protein
STRINGPOPTR_0012s09400.11e-156(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48440.18e-96C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]