PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G089100.3
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C3H
Protein Properties Length: 342aa    MW: 38916 Da    PI: 4.8039
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G089100.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH40.54.5e-13134156426
                         ---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                         e C f+++tGtCk+G +CkF+H+
  Potri.015G089100.3 134 EDCAFYMKTGTCKFGVNCKFNHP 156
                         89********************9 PP

2zf-CCCH32.51.5e-10179202225
                         -S---SGGGGTS--TTTTT-SS-S CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaH 25 
                         ++ +C++++rtG CkyG  C+F+H
  Potri.015G089100.3 179 GQTECKYYLRTGGCKYGKACRFNH 202
                         6789******************** PP

3zf-CCCH36.11.1e-11233257226
                         -S---SGGGGTS--TTTTT-SS-SS CS
             zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                         +++ C f++r+G CkyG++Ck++H+
  Potri.015G089100.3 233 GEKQCEFYMRNGSCKYGATCKYNHP 257
                         6788********************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF902291.44E-6129158IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.089130158IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-6130157IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-10134156IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.104.5E-5136155IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.878177205IPR000571Zinc finger, CCCH-type
SMARTSM003566.1E-5177204IPR000571Zinc finger, CCCH-type
PfamPF006422.9E-8179202IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.62E-6180206IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.4E-6183205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.263231259IPR000571Zinc finger, CCCH-type
SMARTSM003564.7E-5231258IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-9233257IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-6233258IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.1E-4236256IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEQQIELPIQ IQTEIPQLGL QPSSSPHSSH PGTSPSSEPD QTAQDDDNYL HQELQNQLDL  60
REEFKELNDF HEEEEEEEEF KSEERDKKSE FFYENDNESS EKEGDDLEKK NERSDENANN  120
NRRYHQYPVR PEAEDCAFYM KTGTCKFGVN CKFNHPVRRK NQAVKENVKE REEATEKPGQ  180
TECKYYLRTG GCKYGKACRF NHTREKTFSV PPLKTPMPSI LELNFLGLPI RPGEKQCEFY  240
MRNGSCKYGA TCKYNHPDPM AVGGSDLTSA FVNGGTTSLP APSPSSVGSW SSPRALNDPT  300
PFVPYVFSPT RLPSQSSEWN GYQVFTLVLC CLTFIPFNQV T*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G089100.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCU2233371e-135CU223337.1 Populus EST from leave.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024442497.10.0zinc finger CCCH domain-containing protein 67 isoform X2
SwissprotQ9STM43e-70C3H43_ARATH; Zinc finger CCCH domain-containing protein 43
TrEMBLA0A2K1XK910.0A0A2K1XK91_POPTR; Uncharacterized protein
STRINGPOPTR_0012s09400.11e-129(Populus trichocarpa)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G63260.13e-70C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]