PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G015900.1
Common NamePOPTR_0015s01810g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family B3
Protein Properties Length: 120aa    MW: 13278.8 Da    PI: 10.8818
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G015900.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B342.41.3e-134100198
                         EEEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                  B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrse 89 
                         f kvl  s +  ++rl +p +++++  +++  +s++ +  d +g++W++k+++rkk+    v++kGW  Fv +++Lk+g  + F+ ++ ++
  Potri.015G015900.1   4 FSKVL--SKTDIKKRLAVPTNYLKSLpSLNGGCSVDFKAIDAKGKVWTFKCSIRKKGHPkPVISKGWLAFVGSKKLKAGYKIRFYKEN-NK 91 
                         67788..55555678********999*88888*******************886665546*************************443.55 PP

                         E..EEEEE- CS
                  B3  90 felvvkvfr 98 
                          +   +vfr
  Potri.015G015900.1  92 VSTATHVFR 100
                         445666665 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS508638.6422102IPR003340B3 DNA binding domain
SuperFamilySSF1019366.47E-14398IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.6E-174101IPR015300DNA-binding pseudobarrel domain
CDDcd100172.48E-184100No hitNo description
PfamPF023621.2E-104100IPR003340B3 DNA binding domain
SMARTSM010197.6E-54102IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 120 aa     Download sequence    Send to blast
METFSKVLSK TDIKKRLAVP TNYLKSLPSL NGGCSVDFKA IDAKGKVWTF KCSIRKKGHP  60
KPVISKGWLA FVGSKKLKAG YKIRFYKENN KVSTATHVFR VQAEKEIKIF GAVLGYAPI*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15477RKKGHPKPVISKGWLAFVGSKKLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G015900.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2134280.0AC213428.1 Populus trichocarpa clone POP094-E14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011006364.13e-52PREDICTED: putative AP2/ERF and B3 domain-containing protein Os01g0140700
TrEMBLB9IDT91e-80B9IDT9_POPTR; Uncharacterized protein
STRINGPOPTR_0015s01810.12e-81(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2060778
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01500.12e-09B3 family protein