PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.015G009300.1
Common NamePOPTR_0015s01160g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 256aa    MW: 28121.3 Da    PI: 8.6998
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.015G009300.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof1261.2e-393192263
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkksss 63
                        ke+al+cprC stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rknk+sss
  Potri.015G009300.1 31 KEQALNCPRCTSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSSS 92
                        7899******************************************************9875 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074787.0E-272783IPR003851Zinc finger, Dof-type
PfamPF027011.1E-333389IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.0223589IPR003851Zinc finger, Dof-type
PROSITE patternPS0136103773IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MDTSTQWPQG IGVVKPVEGP DMLERRARPQ KEQALNCPRC TSTNTKFCYY NNYSLSQPRY  60
FCKTCRRYWT EGGSLRNVPV GGGSRKNKRS SSNPSSSAAA ASEKKFPLDL TQPNFHQSAT  120
DQNPKIHQGP DLNLAYPPSH ISAMELLKSS GMNPRGFSAF MSIPAASDSN NMFSTGFPLQ  180
EFKPSTQNFS LEGFESGYSN IQAVHETGSS ARLLFPIEDL KQQVPSNSEF ERINARGQGD  240
GAPGYWNGML GGESW*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.57630.0bud
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Expressed at preprocambial stages first in wide domains, and later confined to sites of vein development. {ECO:0000269|PubMed:20563990}.
UniprotTISSUE SPECIFICITY: Accumulates in the stele. {ECO:0000269|PubMed:20563990}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that binds specifically to a 5'-AA[AG]G-3' consensus core sequence. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.015G009300.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankFJ4028440.0FJ402844.1 Populus tomentosa Dof1 (Dof1) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321982.10.0dof zinc finger protein 1
SwissprotQ8LAP84e-51DOF46_ARATH; Dof zinc finger protein DOF4.6
TrEMBLB9IDM40.0B9IDM4_POPTR; Dof family protein
STRINGPOPTR_0015s01160.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24060.13e-46Dof family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]