PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G167000.1
Common NamePOPTR_0014s16500g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family FAR1
Protein Properties Length: 687aa    MW: 79495.2 Da    PI: 6.3342
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G167000.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR175.88.5e-2465156190
                FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek...dgkwevtkleleHnHe 88 
                         ++Y+++A++ GFs+rk++s++s++ g i++r+fvC+++g+++++kk+++++ r r++ r+gC+akl ++ke     ++w+v+++++ HnHe
  Potri.014G167000.1  65 EYYSNFARKNGFSIRKARSTESQHLG-IYRRDFVCYRSGFNQPRKKANVEHPRDRKSIRCGCDAKLYLTKEIvdgLAQWYVSQFSNVHNHE 154
                         69********************9998.******************************************998756679************* PP

                FAR1  89 la 90 
                         l 
  Potri.014G167000.1 155 LL 156
                         96 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.6E-2165156IPR004330FAR1 DNA binding domain
PfamPF105513.0E-24288381IPR018289MULE transposase domain
PROSITE profilePS509669.433559595IPR007527Zinc finger, SWIM-type
PfamPF044343.6E-7565594IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4570597IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 687 aa     Download sequence    Send to blast
MKPSNNIWIR RQQCPCGDWK CYIKYEGDDQ TSASSQLGRS ETTSTELVFT PYVGQIFKSD  60
DDAFEYYSNF ARKNGFSIRK ARSTESQHLG IYRRDFVCYR SGFNQPRKKA NVEHPRDRKS  120
IRCGCDAKLY LTKEIVDGLA QWYVSQFSNV HNHELLEDDQ VRLLPAYRKI QEADQERILL  180
LSKAGFPINR IVKVLELEKG VQPGHFPFIE KDVRNFVRTC KKTVQENDAL LTEKRENDTL  240
ELLEACKSVA ERDPDFAYDY TTDENQKVEN IAWLYGDSVR AYTLYGDVVT FDTTYRSITY  300
GLLLGVWFGM DNHGKAILYG CVLLQDESSH SFTWALQTFV RFIKGRHPQT IITDMELALR  360
DAIARELPNT KHVVCIWHIL SKLSSWLSFP LGSRFEDFKA EFDLLCHEEN VEDFEHQWNL  420
LVARFELVTD KHMALLFSYR GFWSISYIRG SFLARTMAPE FSQSLHTFLK RILGGQTCLQ  480
ASFEQIGLAA TVGNQTRDGT PYMHIKTCLP IEEHARSVLT PYAFNVLQHE IVLSLQYAIQ  540
EMADGSYLVQ HIKKMDGERF VNWMPEDEQI HCSCKEFEHS GILCRHSLRL LEVKNYFQLP  600
ERYFPLRWRR DQSLVPMDDQ NAQSNNDECA QAFHALAEAL LTESLISKER FNHVQREITG  660
LLAEVRSMPV AEELSLNIPP NNVSET*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G167000.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002321197.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024441403.10.0putative protein FAR1-RELATED SEQUENCE 10
RefseqXP_024441404.10.0putative protein FAR1-RELATED SEQUENCE 10
SwissprotQ9LKR40.0FRS10_ARATH; Putative protein FAR1-RELATED SEQUENCE 10
TrEMBLB9IAT40.0B9IAT4_POPTR; FAR1 family protein
STRINGcassava4.1_002824m0.0(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF59430113
Representative plantOGRP3012351
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.10.0FAR1-related sequence 10
Publications ? help Back to Top
  1. Joly-Lopez Z, et al.
    Abiotic Stress Phenotypes Are Associated with Conserved Genes Derived from Transposable Elements.
    Front Plant Sci, 2017. 8: p. 2027
    [PMID:29250089]