PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G146200.1
Common NamePOPTR_0014s14320g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 1122aa    MW: 120271 Da    PI: 4.2449
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G146200.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.79.2e-052244123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        y+C++Cg +F++++   rH r H
  Potri.014G146200.1 22 YVCHKCGWPFPNPHPSARHRRAH 44
                        9*******************998 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501578.8292244IPR007087Zinc finger, C2H2
PROSITE patternPS0002802444IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1122 aa     Download sequence    Send to blast
MDSQDPRKNP THTPGHESHG VYVCHKCGWP FPNPHPSARH RRAHKKICGT LEGYKFVDSE  60
ETPLSALSDD DHGSDEDPKT PSPKGLERGI NEKGCGGVGS RSNRSEDDVF TDAIAEFPES  120
GSSPVTGEHT RDVKEPEINL EINKATAQSS EDGSITVISP PPSNSADHIQ MQSTEVPVIN  180
LSGSAQESLD HGSNATIASM TRSLTDCRGE ESDFEHSHDN GSSAWDSIPI KLETQTDASQ  240
ENKKSGTVED LPETDAKGNE ETKLDGQLLD VVVSTDDNAE DASESQKMED VTSQPVPAAE  300
VLQLKEGGYT DDLASGMSLN DLSPEVNLAE PAHSSISTAQ IEGDTQEIDS AVYVNSAVSY  360
DNKGEGNGNM HVLIVPNDLT LVADAENMVK GFKDLEGGKL PQLMNMDSFE VSNNVKDSDL  420
KNNPQGFNSR PLTEDTEVSA SNMHVLNDNL EPKDGTSQHI VELPDEAEAD MPQRSEVGVT  480
DVVTGDLEKS ISVHSPEEDV PRDHCETSSM TRSIEHATKA TSDTNTVVVP MDAEVRQTNL  540
IGMDDTGNDE KDKIESSEVG ENDKNKRNTK ESFAENRIPP SKHASISSEQ ADQRNSVLGD  600
VKAAGLEEGK IERCNASEIV TEGDSVSGLG EENLLREPKS TPESAVNVES CFTSENDINV  660
CEGRLPQLAS IPSEQADQRN SVLGDVKAAG LEEGKIERCN ASEIVTEGDS VSGLGEENPS  720
RGPKTTPESA VNVESCFISE NDINVCEGKL PQHEHTDIGG VLDPQESRKE PESNGMANQL  780
VERAGEVSAA AESYSGGDAE VLWKSSEDKM VREPLVSRSE PSSSLQNSSP VADNQAKDFL  840
GVASGNTPES LPDEGDNNLV TQQVVASATD FSVDSISQTD SLEGHWGSVS VLSTQSDIPA  900
ILDAEPLPSN GSQALSEAEK ATLKKPIAAS ETEHADKSDI FDPPSFMTLV EPRDVVNQKA  960
AASEIQTTGN PQQPKAASVQ AGWFPSITNV LSESQGRKKN EEIIAKVTNW STGEQHPSLR  1020
SPQHTPLKSL LGEASMETKS KALNAKEIPV EKDGFAAKDN GALPKTVSSI LAPQEPVGEP  1080
AMVEEKAWSS PARYPADIKR EKRKVRGRPY WAQFVCCSSV N*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G146200.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC2140971e-121AC214097.1 Populus trichocarpa clone POP027-H14, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024440950.10.0uncharacterized protein LOC18105314 isoform X1
TrEMBLA0A2K1XVT90.0A0A2K1XVT9_POPTR; Uncharacterized protein
STRINGPOPTR_0014s14320.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF50511719
Representative plantOGRP744922