PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G135700.2
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family HB-other
Protein Properties Length: 956aa    MW: 107031 Da    PI: 5.4227
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G135700.2genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox17.38.1e-06725785154
                         TT--SS--HHHHHHHHHHHHHSSS-..-HHHHHHHHHHC.....TS-HHHHHHHHHHHHHH CS
            Homeobox   1 rrkRttftkeqleeLeelFeknryp..saeereeLAkkl.....gLterqVkvWFqNrRak 54 
                         +rkRt ++++q++ +e++   ++ +  +a++ +  A+kl     ++t +q k+W  Nr+a+
  Potri.014G135700.2 725 KRKRTIMNDHQITLMEKALLDEPEMqrNAAALQSWADKLslhgsEVTPSQLKNWLNNRKAR 785
                         79*****************99777722567899******9999999**************8 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-5714788IPR009057Homeodomain-like
PROSITE profilePS5007110.301722789IPR001356Homeobox domain
SMARTSM003893.2E-6724793IPR001356Homeobox domain
CDDcd000861.19E-5725788No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 956 aa     Download sequence    Send to blast
MRLAKEELSM AEQVIDLISA VKELHGLSSQ ELNKLLRDSE NFTIHFHSEK GSTTKIDVEK  60
LAGFLPLHLI AVLMSSDRDE SLLRYLLCGI RLLHSLCDLG PRNSKLEQVL LDDVKVSEQL  120
LDLVFYLLIV LGGYRQENLN SCSLLLVHSA LVASSLHLLS GCISSQWQDL VQVLLAHPKV  180
DIFMDAAFGA VHVAIRFLQV KLSDQHTGLH VKSPTAEQIV NYICQQCEAS LQTLQSLCQQ  240
KMFRERLLRN KELCGRGGVL FLAQAILKLN ITPPFVDSFT VVAAVSRLKA KVLSILLHLC  300
EAESISYLDE VASSPWSLDL AKSVVLEILE LLKAALSKDP NHLSPCSDRT FPMGLLRLNA  360
MRLADIFSDD SNFRSYITTC FTKVLTAIFS LPHGDFLSIW CSSEFPPREE DGTLEYDAFT  420
AAGWFLDTFA AANQSNAINL EITLIPSNMP QAMYAHQRTS LFVKLIANLH CFVPNICEEQ  480
ERNLFLHKFL ECMRMDPSKS LPGFSFTSGA LRAVTVCRNL RSLLSHAESL IPNFLNEEDV  540
QLLRVFFNQL QSLINPTDFE ENQVQEIKSE RSISLDKFCR LTIDEHLQEA QSTGAYGSPM  600
VMKEPSHLYN RTDIQKEEMS ENSAIQEEEK PNFKNRNQAE DAIKEDKAKP GACVSDVLRE  660
IDRDAHTVET SGSDTSSTRG KTYAGQVVNG DFLKSSEHIK RNGCQGVCGG EKVESPHFEE  720
KQPRKRKRTI MNDHQITLME KALLDEPEMQ RNAAALQSWA DKLSLHGSEV TPSQLKNWLN  780
NRKARLARAG KDVRAPMEVD NTFPEKQVGQ AQQQDTPESP SEDNITSSAR GLQNTSEIGV  840
FGDPEAGIGL ADFVDIGASE FVQCKPGQFV VLVDGQGEEI GKGKVYQVQG KWYGRILEES  900
EMCVVDVTEL KTEKWVRLPY PSETTGMSFY EAEQKIGVMR VLWDSNKIYM SRPQC*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1720726KQPRKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G135700.2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1826650.0AC182665.2 Populus trichocarpa clone Pop1-18D20, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024441458.10.0nodulin homeobox
TrEMBLA0A2K1XV780.0A0A2K1XV78_POPTR; Uncharacterized protein
STRINGPOPTR_0002s22800.10.0(Populus trichocarpa)