PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G132700.1
Common NamePOPTR_0014s12720g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 472aa    MW: 52308.7 Da    PI: 9.2623
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G132700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05628123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C++C+k F r  nL+ H r H
  Potri.014G132700.1  6 FVCEICNKGFQRDQNLQFHRRGH 28
                        89*******************88 PP

2zf-C2H216.62.3e-056486123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        +kC +C+k +  +s+ k H+rt+
  Potri.014G132700.1 64 WKCDKCSKKYAVQSDWKAHQRTC 86
                        58*******************98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.93E-9528No hitNo description
Gene3DG3DSA:3.30.160.604.1E-5528IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003550.069628IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.824628IPR007087Zinc finger, C2H2
PROSITE patternPS000280828IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.1E-65285IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576673.93E-95985No hitNo description
SMARTSM00355856484IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 472 aa     Download sequence    Send to blast
METNRFVCEI CNKGFQRDQN LQFHRRGHNP PWKLWQRTAT EVRKRVYLTG IKKHFSRNNG  60
EKKWKCDKCS KKYAVQSDWK AHQRTCGTRE YKCDCGTIFS RRDCFITHRA FCDALAEENS  120
KVNQGVMANM GSNLQNQMSE PMSSHSMPLS TDTSTSIGMP YFNSFDPKNS LKYLPQELVP  180
IPSKSMNMAG GMFSSSSGTL FGSPRSISST SSLQLSSKGS SGLHYLQDNK NGCQISASAH  240
MSATAMLKEA AQMGATASNS INSPVMQKSF ASSMAGPHDQ LSSIKPPTYG RIQQHNTSYD  300
HLPLHASGQT SMAGINGVGG FSNQPLQRGP QETSQILDTS GTVNSAMNDM EMFTGVFMSN  360
DQNPGFIRNM EQEDSGGSSL IHGRNPLMER NPTGPSRFAG TSIEGGDMMT RDFRGVGGAR  420
PTNLHDQRQQ HQQRLEMEGM SQQQRMPMMN PFQQQPSLRE SAMEKPSIWD V*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C4e-3360123366Zinc finger protein JACKDAW
5b3h_F4e-3360123366Zinc finger protein JACKDAW
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Observed in vegetative tissues. Mainly expressed in hypocotyls, petioles, shoot apices, root tips, and trichomes, and, at low levels, in leaves, stems and flowers. {ECO:0000269|PubMed:25035403}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269|PubMed:25035403}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G132700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011033580.10.0PREDICTED: zinc finger protein NUTCRACKER-like
SwissprotQ9SCQ61e-71IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBLA0A3N7FC770.0A0A3N7FC77_POPTR; Uncharacterized protein
STRINGPOPTR_0014s12720.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF21923085
Representative plantOGRP9516242
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03840.25e-61C2H2 family protein
Publications ? help Back to Top
  1. Fukazawa J, et al.
    DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis.
    Plant Cell, 2014. 26(7): p. 2920-38
    [PMID:25035403]
  2. Moreno-Risueno MA, et al.
    Transcriptional control of tissue formation throughout root development.
    Science, 2015. 350(6259): p. 426-30
    [PMID:26494755]
  3. Khare D, et al.
    Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana.
    New Phytol., 2017. 213(3): p. 1257-1273
    [PMID:27768815]