PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G123700.1
Common NamePOPTR_0014s11880g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family C2H2
Protein Properties Length: 190aa    MW: 20891.6 Da    PI: 8.1595
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G123700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.10.000144567123
                        EEETTTTEEESSHHHHHHHHHHT CS
             zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
                        ++C+ C++ F ++  L  H++ H
  Potri.014G123700.1 45 FECHFCHRAFANSQALGGHQNAH 67
                        89******************988 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576679.01E-74172No hitNo description
Gene3DG3DSA:3.30.160.601.1E-44171IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015711.7184572IPR007087Zinc finger, C2H2
PROSITE patternPS0002804767IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 190 aa     Download sequence    Send to blast
MAESSTPFQE SDHKATSKLK LFGFPLTEQD EILSKTENTL GNRKFECHFC HRAFANSQAL  60
GGHQNAHKRE RQRARRAQYL CDRRLTAAAQ VLCSHAVKSP PLIYPRGLIT SNSTAAAVEF  120
RPQIASDYPS QPLLFPSSPP DHHSPSQIYI AHPLHDADTM PSFIKVPGKL CSNDDDVGVD  180
LCLKLTPSG*
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G123700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_011041621.11e-125PREDICTED: uncharacterized protein LOC105137538
TrEMBLB9I9M01e-138B9I9M0_POPTR; Uncharacterized protein
STRINGPOPTR_0014s11880.11e-139(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF39032449
Representative plantOGRP8215137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58070.13e-14C2H2 family protein