PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G100900.3
Common NamePOPTR_0014s09640g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family Dof
Protein Properties Length: 262aa    MW: 28599.5 Da    PI: 9.1679
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G100900.3genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof125.61.5e-392080262
              zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62
                        ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk+s+
  Potri.014G100900.3 20 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRST 80
                        6899******************************************************986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074782.0E-271978IPR003851Zinc finger, Dof-type
PfamPF027011.8E-332278IPR003851Zinc finger, Dof-type
PROSITE profilePS5088429.1992478IPR003851Zinc finger, Dof-type
PROSITE patternPS0136102662IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    Send to blast
MDEMASNSCG RPGVERKPRP QEQLNCPRCN STNTKFCYYN NYSLTQPRYF CKTCRRYWTE  60
GGSLRNVPVG GGSRKNKRST SSSVATSSSK LPDLNPPSLS HFSSQNPKST HEGQDLNLAF  120
PAMQDSQGIS HYTEVPKTEN RNNNQHNSSS SPYTSSPISA MELLRSGFAS RGLNTFIPTP  180
MPDSNTLYSS GGFPLQELRP TLSFPADGLG SRYGIQENSG RLLFPFGELK QLSSTTSEVD  240
QNKGQGGSSG YWNGMFGGGS W*
Expression -- Description ? help Back to Top
Source Description
UniprotDEVELOPMENTAL STAGE: Turned off in siliques when they reached full maturation. Not expressed in developing or mature embryos.
UniprotTISSUE SPECIFICITY: Expressed in the phloem of the mother plant, including in roots, stem, leaves and flowers, but not present in the seed and embryo. In maturing siliques, found all through the funiculus connecting the placenta to the ovule, but not in the ovule.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor specifically involved in the maternal control of seed germination. Regulates transcription by binding to a 5'-AA[AG]G-3' consensus core sequence. May ensure the inactivity of a component that would be activated to trigger germination as a consequence of red light perception.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G100900.3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320208.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_024439976.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_024439977.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_024439978.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_024439980.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_024439981.10.0dof zinc finger protein DOF2.5 isoform X1
SwissprotQ433851e-71DOF37_ARATH; Dof zinc finger protein DOF3.7
TrEMBLU5FT891e-152U5FT89_POPTR; Uncharacterized protein
STRINGPOPTR_0014s09640.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Representative plantOGRP3817445
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.46e-77Dof family protein