PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v1.0, v2.0, v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G070400.1
Common NamePOPTR_0014s06600g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family LBD
Protein Properties Length: 247aa    MW: 25203.7 Da    PI: 8.0101
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G070400.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF260130.66.8e-41341341100
              DUF260   1 aCaaCkvlrrkCakdCvlapyfpaeq.pkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleql 90 
                         +C aCk+lrrkC+++C++apyf +eq +++fa+vhk+FGasnv+kll ++p ++r da+ +++yeA+ar+rdPvyG+v++i++lqqq+ +l
  Potri.014G070400.1  34 PCGACKFLRRKCVPGCIFAPYFDSEQgAAHFAAVHKVFGASNVSKLLLHIPVHKRLDAVVTICYEAQARLRDPVYGCVAHIFALQQQVVNL 124
                         7***********************9989*************************************************************** PP

              DUF260  91 kaelallkee 100
                         +ael++l+++
  Potri.014G070400.1 125 QAELSYLQAH 134
                         *****99986 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089123.04633135IPR004883Lateral organ boundaries, LOB
PfamPF031956.4E-4034132IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 247 aa     Download sequence    Send to blast
MSTATTNPIN TGAGGGSSGG GGGGGGGGGG GGGPCGACKF LRRKCVPGCI FAPYFDSEQG  60
AAHFAAVHKV FGASNVSKLL LHIPVHKRLD AVVTICYEAQ ARLRDPVYGC VAHIFALQQQ  120
VVNLQAELSY LQAHLAALEV PSPPPPPPPT LVTPPPLSIA DLPSASSIPA AYDLSCLFDP  180
MMQPSWSNMQ PQRQMDIRQF GGSGGSSGTG GGDLQALARE LLHRRGSPPP GFMSCSDTLA  240
SPSISK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Pth.116230.0bud
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002320063.11e-178LOB domain protein 18
SwissprotO221316e-82LBD18_ARATH; LOB domain-containing protein 18
TrEMBLB9IC051e-178B9IC05_POPTR; LOB domain protein 18
STRINGVIT_15s0048g00830.t011e-101(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
Representative plantOGRP40515100
FabidsOGEF17713493
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G45420.17e-80LOB domain-containing protein 18