PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G055700.1
Common NameTINYL9
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 270aa    MW: 29786.9 Da    PI: 5.0814
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G055700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.48.8e-1990139255
                 AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                          y+GVr ++ +g+Wv+eIr+p++   + r++lg++ tae+Aa+a++ a+++++g
  Potri.014G055700.1  90 TYRGVRMRS-WGKWVCEIREPRK---KSRIWLGTYPTAEMAARAHDVAALAIKG 139
                         69****998.**********843...6**********************99887 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.11E-2190148IPR016177DNA-binding domain
PfamPF008471.8E-1390139IPR001471AP2/ERF domain
SMARTSM003804.0E-3690153IPR001471AP2/ERF domain
PROSITE profilePS5103223.14390147IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.106.3E-3290148IPR001471AP2/ERF domain
PRINTSPR003672.2E-1091102IPR001471AP2/ERF domain
CDDcd000183.31E-3291149No hitNo description
PRINTSPR003672.2E-10113129IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MEKHIILEID AQDNSLTSSS TSTTTTTTTT SSSSSSFSTT ISYTDRISKK EENSIADLKG  60
SRKSQELQSG NEGNKKRKTT RNENNGKHPT YRGVRMRSWG KWVCEIREPR KKSRIWLGTY  120
PTAEMAARAH DVAALAIKGG SAYLNFPELV DELPRPLSKS PKDIQAAAAK AAAASFPETR  180
HCEAEAEAEA DMSHAELNVS NLSDNLAMDN IQESSSSPST DVDDKLFDLP DLFIDGVNHS  240
DGFCYYSPPW QLCSADTGFR LEEPFLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-16881471272Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G055700.1
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEF1559280.0EF155928.1 Populus trichocarpa TINY-like protein (TINYL9) gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375232.20.0ethylene-responsive transcription factor ERF034
SwissprotQ8LBQ73e-70ERF34_ARATH; Ethylene-responsive transcription factor ERF034
TrEMBLA9PL780.0A9PL78_POPTR; TINY-like protein
STRINGPOPTR_0014s05500.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF19234263
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44940.12e-66ERF family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]