PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Previous version: v3.0 v4.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Potri.014G046700.1
Common NamePOPTR_0014s04610g
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Malpighiales; Salicaceae; Saliceae; Populus
Family ERF
Protein Properties Length: 228aa    MW: 25966.8 Da    PI: 5.8035
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Potri.014G046700.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.81.5e-19119169356
                 AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         ykGVr+++ +g+++AeIrdp++ng  +r +lg++ t+e+Aa a+++a+ k++g+
  Potri.014G046700.1 119 YKGVRRRP-WGKYAAEIRDPKKNG--ARQWLGTYETPEDAAMAYDRAAFKMRGA 169
                         9*******.***********9998..**************************95 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.101.7E-31118177IPR001471AP2/ERF domain
PROSITE profilePS5103223.512118176IPR001471AP2/ERF domain
SMARTSM003802.0E-37118182IPR001471AP2/ERF domain
PfamPF008474.0E-13118168IPR001471AP2/ERF domain
CDDcd000181.62E-30118178No hitNo description
SuperFamilySSF541714.38E-23118177IPR016177DNA-binding domain
PRINTSPR003675.5E-13119130IPR001471AP2/ERF domain
PRINTSPR003675.5E-13158178IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 228 aa     Download sequence    Send to blast
MYSQAASRSD FALLESIRHH LLEDEPVPEN NNGIQARPVY CESLSFNRLF SMENWSDILL  60
QIDNSSQTMA CDTQVPESLD MQWSLWNQVD SMTTTSNYEF EVSVEDASNY LPPPKGRNYK  120
GVRRRPWGKY AAEIRDPKKN GARQWLGTYE TPEDAAMAYD RAAFKMRGAK AKLNFPHLIG  180
SSNYEPVRVT NKRYSPEPSS LSSPVSSLSE VDDESPKSKR RTYRFDS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A3e-30115181268ATERF1
3gcc_A3e-30115181268ATERF1
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed after ethylene treatment. {ECO:0000269|PubMed:11950980}.
Functional Description ? help Back to Top
Source Description
UniProtActs as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. Involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways. {ECO:0000269|PubMed:11950980}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapPotri.014G046700.1
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Strongly induced by wounding. Induced by Pseudomonas syringae tomato (both virulent and avirulent avrRpt2 strains), independently of PAD4. Also induced by methyl jasmonate (MeJA) independently of JAR1, but seems to not be affected by ethylene. Induction by salicylic acid (SA) is controlled by growth and/or developmental conditions, and seems to be more efficient and independent of PAD4 in older plants. {ECO:0000269|PubMed:11950980, ECO:0000269|PubMed:12068110}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006375127.11e-170ethylene-responsive transcription factor 13
SwissprotQ8L9K12e-55ERF99_ARATH; Ethylene-responsive transcription factor 13
TrEMBLU5FRU21e-168U5FRU2_POPTR; Uncharacterized protein
STRINGPOPTR_0014s04610.15e-74(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF51233157
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44840.11e-53ethylene-responsive element binding factor 13
Publications ? help Back to Top
  1. Maimbo M,Ohnishi K,Hikichi Y,Yoshioka H,Kiba A
    Induction of a small heat shock protein and its functional roles in Nicotiana plants in the defense response against Ralstonia solanacearum.
    Plant Physiol., 2007. 145(4): p. 1588-99
    [PMID:17965181]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]